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(-) Description

Title :  ELECTRON CRYO-MICROSCOPY OF HUMAN PAPILLOMAVIRUS TYPE 16 CAPSID
 
Authors :  G. Cardone, A. L. Moyer, N. Cheng, C. D. Thompson, I. Dvoretzky, D. R. Low J. T. Schiller, A. C. Steven, C. B. Buck, B. L. Trus
Date :  20 Mar 14  (Deposition) - 23 Jul 14  (Release) - 27 Aug 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  9.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (60x)
Keywords :  Capsid Protein, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Cardone, A. L. Moyer, N. Cheng, C. D. Thompson, I. Dvoretzky, D. R. Lowy, J. T. Schiller, A. C. Steven, C. B. Buck, B. L. Trus
Maturation Of The Human Papillomavirus 16 Capsid.
Mbio V. 5 01104 2014
PubMed-ID: 25096873  |  Reference-DOI: 10.1128/MBIO.01104-14

(-) Compounds

Molecule 1 - MAJOR CAPSID PROTEIN L1
    Chains: B, A, E, D, C, F
    Fragment: UNP RESIDUES 35-512
    Organism Scientific: HUMAN PAPILLOMAVIRUS TYPE 16
    Organism Taxid: 333760
    Synonym: L1 PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (60x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3J6R)

(-) Sites  (0, 0)

(no "Site" information available for 3J6R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3J6R)

(-) Cis Peptide Bonds  (138, 138)

Asymmetric Unit
No.Residues
1Ala B:9 -Thr B:10
2Thr B:10 -Val B:11
3Val B:11 -Tyr B:12
4Pro B:15 -Val B:16
5Val B:16 -Pro B:17
6Pro B:17 -Val B:18
7Val B:18 -Ser B:19
8Gly B:405 -Leu B:406
9Pro B:410 -Gly B:411
10Gly B:412 -Thr B:413
11Glu B:415 -Asp B:416
12Asp B:416 -Thr B:417
13Arg B:419 -Phe B:420
14Phe B:420 -Val B:421
15Thr B:422 -Ser B:423
16Ala B:425 -Ile B:426
17Ile B:426 -Ala B:427
18Ala B:427 -Cys B:428
19Cys B:428 -Gln B:429
20Lys B:430 -His B:431
21His B:431 -Thr B:432
22Pro B:436 -Lys B:437
23Glu B:438 -Asp B:439
24Leu B:441 -Lys B:442
25Lys B:475 -Ala B:476
26Lys B:477 -Pro B:478
27Lys B:479 -Phe B:480
28Gly B:483 -Lys B:484
29Lys B:484 -Arg B:485
30Arg B:485 -Lys B:486
31Thr A:10 -Val A:11
32Val A:11 -Tyr A:12
33Tyr A:12 -Leu A:13
34Pro A:15 -Val A:16
35Leu A:406 -Gln A:407
36Pro A:410 -Gly A:411
37Gly A:411 -Gly A:412
38Gly A:412 -Thr A:413
39Asp A:416 -Thr A:417
40Thr A:417 -Tyr A:418
41Arg A:419 -Phe A:420
42Phe A:420 -Val A:421
43Val A:421 -Thr A:422
44Thr A:422 -Ser A:423
45Gln A:424 -Ala A:425
46Ala A:425 -Ile A:426
47Ala A:427 -Cys A:428
48Gln A:429 -Lys A:430
49His A:431 -Thr A:432
50Glu A:438 -Asp A:439
51Leu A:474 -Lys A:475
52Lys A:475 -Ala A:476
53Phe A:480 -Thr A:481
54Thr A:481 -Leu A:482
55Gly A:483 -Lys A:484
56Arg A:485 -Lys A:486
57Val E:16 -Pro E:17
58Val E:18 -Ser E:19
59Pro E:409 -Pro E:410
60Pro E:410 -Gly E:411
61Arg E:419 -Phe E:420
62Phe E:420 -Val E:421
63Thr E:422 -Ser E:423
64Ile E:426 -Ala E:427
65Ala E:427 -Cys E:428
66Cys E:428 -Gln E:429
67Pro E:434 -Ala E:435
68Ala E:435 -Pro E:436
69Leu E:474 -Lys E:475
70Lys E:475 -Ala E:476
71Lys E:479 -Phe E:480
72Phe E:480 -Thr E:481
73Leu E:482 -Gly E:483
74Gly E:483 -Lys E:484
75Arg E:485 -Lys E:486
76Thr D:10 -Val D:11
77Tyr D:12 -Leu D:13
78Pro D:410 -Gly D:411
79Gly D:411 -Gly D:412
80Thr D:413 -Leu D:414
81Leu D:414 -Glu D:415
82Thr D:417 -Tyr D:418
83Tyr D:418 -Arg D:419
84Arg D:419 -Phe D:420
85Ser D:423 -Gln D:424
86Ile D:426 -Ala D:427
87Ala D:427 -Cys D:428
88Cys D:428 -Gln D:429
89Gln D:429 -Lys D:430
90His D:431 -Thr D:432
91Pro D:436 -Lys D:437
92Leu D:474 -Lys D:475
93Ala D:476 -Lys D:477
94Lys D:479 -Phe D:480
95Phe D:480 -Thr D:481
96Leu D:482 -Gly D:483
97Thr C:10 -Val C:11
98Val C:11 -Tyr C:12
99Pro C:15 -Val C:16
100Val C:18 -Ser C:19
101Leu C:406 -Gln C:407
102Pro C:410 -Gly C:411
103Gly C:411 -Gly C:412
104Gly C:412 -Thr C:413
105Thr C:413 -Leu C:414
106Leu C:414 -Glu C:415
107Thr C:417 -Tyr C:418
108Arg C:419 -Phe C:420
109Thr C:422 -Ser C:423
110Gln C:424 -Ala C:425
111Ala C:425 -Ile C:426
112Pro C:434 -Ala C:435
113Leu C:474 -Lys C:475
114Pro C:478 -Lys C:479
115Thr C:481 -Leu C:482
116Leu C:482 -Gly C:483
117Lys C:484 -Arg C:485
118Arg C:485 -Lys C:486
119Ala F:9 -Thr F:10
120Pro F:15 -Val F:16
121Leu F:406 -Gln F:407
122Thr F:413 -Leu F:414
123Glu F:415 -Asp F:416
124Thr F:417 -Tyr F:418
125Arg F:419 -Phe F:420
126Val F:421 -Thr F:422
127Ile F:426 -Ala F:427
128Ala F:427 -Cys F:428
129Gln F:429 -Lys F:430
130His F:431 -Thr F:432
131Leu F:474 -Lys F:475
132Lys F:475 -Ala F:476
133Pro F:478 -Lys F:479
134Phe F:480 -Thr F:481
135Leu F:482 -Gly F:483
136Gly F:483 -Lys F:484
137Lys F:484 -Arg F:485
138Arg F:485 -Lys F:486

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J6R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3J6R)

(-) Exons   (0, 0)

(no "Exon" information available for 3J6R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:478
 aligned with Q4VRM0_HPV16 | Q4VRM0 from UniProtKB/TrEMBL  Length:531

    Alignment length:478
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
         Q4VRM0_HPV16    35 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeeee....eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee.........eeeeeee...................eeeeee...eeeeeeee....eeeeeee................eeeeeee.....ee....................hhhhh..eeeehhhhhhh........eeeeeeeeeeeeeee...ee............hhhhhh.....eeeeee...ee..........................eeeeeeee.....ee..eee............eee..eeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r A   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain A from PDB  Type:PROTEIN  Length:478
 aligned with VL1_HPV16 | P03101 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
            VL1_HPV16     9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 486
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeeee....eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee.........eeeeeee...................eeeeee...eeeeeeee....eeeeeee................eeeeeee.....ee....................hhhhh..eeeehhhhhhh........eeeeeeeeeeeeeee...ee............hhhhhh.....eeeeee...ee..........................eeeeeeee.....ee..eee............eee..eeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r A   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain B from PDB  Type:PROTEIN  Length:478
 aligned with Q4VRM0_HPV16 | Q4VRM0 from UniProtKB/TrEMBL  Length:531

    Alignment length:478
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
         Q4VRM0_HPV16    35 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeeeee...eeeee.....ee......eee........eeeeee..hhhhh............eeeeeeeeeeeee.........eeeeee.....................eeeee...eeeeeeee....eee.eee................eee..ee.....ee...................hhhhhh..eeeehhhhhh.............eeeeeeeeeee...ee............hhhhh......eeeeee...ee........eee...............eeeeeee......eeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r B   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain B from PDB  Type:PROTEIN  Length:478
 aligned with VL1_HPV16 | P03101 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
            VL1_HPV16     9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 486
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeeeee...eeeee.....ee......eee........eeeeee..hhhhh............eeeeeeeeeeeee.........eeeeee.....................eeeee...eeeeeeee....eee.eee................eee..ee.....ee...................hhhhhh..eeeehhhhhh.............eeeeeeeeeee...ee............hhhhh......eeeeee...ee........eee...............eeeeeee......eeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r B   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain C from PDB  Type:PROTEIN  Length:478
 aligned with Q4VRM0_HPV16 | Q4VRM0 from UniProtKB/TrEMBL  Length:531

    Alignment length:478
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
         Q4VRM0_HPV16    35 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee........eeeeeeee...................eeeeeee..eeeeeeee....eeeeeee................eeeeeee.....ee...........................eeeehhhhhhh........eeeeeeeeeeeeeee.................hhhhhh.....eeeeee...ee........ee................eeeeeeee....eeeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhh.............................................eeee...........hhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r C   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain C from PDB  Type:PROTEIN  Length:478
 aligned with VL1_HPV16 | P03101 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
            VL1_HPV16     9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 486
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee........eeeeeeee...................eeeeeee..eeeeeeee....eeeeeee................eeeeeee.....ee...........................eeeehhhhhhh........eeeeeeeeeeeeeee.................hhhhhh.....eeeeee...ee........ee................eeeeeeee....eeeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhh.............................................eeee...........hhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r C   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain D from PDB  Type:PROTEIN  Length:478
 aligned with Q4VRM0_HPV16 | Q4VRM0 from UniProtKB/TrEMBL  Length:531

    Alignment length:478
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
         Q4VRM0_HPV16    35 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee..hhhhh............eeeeeeeeeeeee.........eeeeeee...................eeeeee...eeeeeeee....eeeeee..................eeeeee..........................hhhhhh....eehhhhhhhh.......eeeeeeee...eeee.................hhhhh......eeee....eee.......eee................eeeeeeee.....eeeeee..............eeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r D   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain D from PDB  Type:PROTEIN  Length:478
 aligned with VL1_HPV16 | P03101 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
            VL1_HPV16     9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 486
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee..hhhhh............eeeeeeeeeeeee.........eeeeeee...................eeeeee...eeeeeeee....eeeeee..................eeeeee..........................hhhhhh....eehhhhhhhh.......eeeeeeee...eeee.................hhhhh......eeee....eee.......eee................eeeeeeee.....eeeeee..............eeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r D   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain E from PDB  Type:PROTEIN  Length:478
 aligned with Q4VRM0_HPV16 | Q4VRM0 from UniProtKB/TrEMBL  Length:531

    Alignment length:478
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
         Q4VRM0_HPV16    35 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee..........eeeeee...................eeeee....eeeeeeee....eeeeeee................eeeeeee..........................hhhhhhh...eehhhhhhh........eeeeeeeeeeeeeee.................hhhhhh.....eeeeee...ee.........ee...............eeeeeeee.....eeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r E   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain E from PDB  Type:PROTEIN  Length:478
 aligned with VL1_HPV16 | P03101 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
            VL1_HPV16     9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 486
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee..........eeeeee...................eeeee....eeeeeeee....eeeeeee................eeeeeee..........................hhhhhhh...eehhhhhhh........eeeeeeeeeeeeeee.................hhhhhh.....eeeeee...ee.........ee...............eeeeeeee.....eeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r E   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain F from PDB  Type:PROTEIN  Length:478
 aligned with Q4VRM0_HPV16 | Q4VRM0 from UniProtKB/TrEMBL  Length:531

    Alignment length:478
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
         Q4VRM0_HPV16    35 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee.........eeeeeee...................eeeeee...eeeeeeee....eeeeeee................eeeeeee..........................hhhhhh....eehhhhhhh........eeeeeee.eeeeeee.................hhhhhh.....eeeeee..............ee..........ee...eeeeeee......eeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r F   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        


Chain F from PDB  Type:PROTEIN  Length:478
 aligned with VL1_HPV16 | P03101 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
            VL1_HPV16     9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRK 486
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeee.........eeeeeee...................eeeeee...eeeeeeee....eeeeeee................eeeeeee..........................hhhhhh....eehhhhhhh........eeeeeee.eeeeeee.................hhhhhh.....eeeeee..............ee..........ee...eeeeeee......eeeeeee............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh...........................................eeee...........hhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j6r F   9 ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK 486
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J6R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J6R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J6R)

(-) Gene Ontology  (10, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (VL1_HPV16 | P03101)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039620    T=7 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=7 symmetry. The T=7 capsid is composed of 12 pentameric and 60 hexameric capsomeres.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain A,B,C,D,E,F   (Q4VRM0_HPV16 | Q4VRM0)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039620    T=7 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=7 symmetry. The T=7 capsid is composed of 12 pentameric and 60 hexameric capsomeres.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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Asymmetric Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3j6r)
 
  Sites
(no "Sites" information available for 3j6r)
 
  Cis Peptide Bonds
    Ala A:425 - Ile A:426   [ RasMol ]  
    Ala A:427 - Cys A:428   [ RasMol ]  
    Ala B:425 - Ile B:426   [ RasMol ]  
    Ala B:427 - Cys B:428   [ RasMol ]  
    Ala B:9 - Thr B:10   [ RasMol ]  
    Ala C:425 - Ile C:426   [ RasMol ]  
    Ala D:427 - Cys D:428   [ RasMol ]  
    Ala D:476 - Lys D:477   [ RasMol ]  
    Ala E:427 - Cys E:428   [ RasMol ]  
    Ala E:435 - Pro E:436   [ RasMol ]  
    Ala F:427 - Cys F:428   [ RasMol ]  
    Ala F:9 - Thr F:10   [ RasMol ]  
    Arg A:419 - Phe A:420   [ RasMol ]  
    Arg A:485 - Lys A:486   [ RasMol ]  
    Arg B:419 - Phe B:420   [ RasMol ]  
    Arg B:485 - Lys B:486   [ RasMol ]  
    Arg C:419 - Phe C:420   [ RasMol ]  
    Arg C:485 - Lys C:486   [ RasMol ]  
    Arg D:419 - Phe D:420   [ RasMol ]  
    Arg E:419 - Phe E:420   [ RasMol ]  
    Arg E:485 - Lys E:486   [ RasMol ]  
    Arg F:419 - Phe F:420   [ RasMol ]  
    Arg F:485 - Lys F:486   [ RasMol ]  
    Asp A:416 - Thr A:417   [ RasMol ]  
    Asp B:416 - Thr B:417   [ RasMol ]  
    Cys B:428 - Gln B:429   [ RasMol ]  
    Cys D:428 - Gln D:429   [ RasMol ]  
    Cys E:428 - Gln E:429   [ RasMol ]  
    Gln A:424 - Ala A:425   [ RasMol ]  
    Gln A:429 - Lys A:430   [ RasMol ]  
    Gln C:424 - Ala C:425   [ RasMol ]  
    Gln D:429 - Lys D:430   [ RasMol ]  
    Gln F:429 - Lys F:430   [ RasMol ]  
    Glu A:438 - Asp A:439   [ RasMol ]  
    Glu B:415 - Asp B:416   [ RasMol ]  
    Glu B:438 - Asp B:439   [ RasMol ]  
    Glu F:415 - Asp F:416   [ RasMol ]  
    Gly A:411 - Gly A:412   [ RasMol ]  
    Gly A:412 - Thr A:413   [ RasMol ]  
    Gly A:483 - Lys A:484   [ RasMol ]  
    Gly B:405 - Leu B:406   [ RasMol ]  
    Gly B:412 - Thr B:413   [ RasMol ]  
    Gly B:483 - Lys B:484   [ RasMol ]  
    Gly C:411 - Gly C:412   [ RasMol ]  
    Gly C:412 - Thr C:413   [ RasMol ]  
    Gly D:411 - Gly D:412   [ RasMol ]  
    Gly E:483 - Lys E:484   [ RasMol ]  
    Gly F:483 - Lys F:484   [ RasMol ]  
    His A:431 - Thr A:432   [ RasMol ]  
    His B:431 - Thr B:432   [ RasMol ]  
    His D:431 - Thr D:432   [ RasMol ]  
    His F:431 - Thr F:432   [ RasMol ]  
    Ile B:426 - Ala B:427   [ RasMol ]  
    Ile D:426 - Ala D:427   [ RasMol ]  
    Ile E:426 - Ala E:427   [ RasMol ]  
    Ile F:426 - Ala F:427   [ RasMol ]  
    Leu A:406 - Gln A:407   [ RasMol ]  
    Leu A:474 - Lys A:475   [ RasMol ]  
    Leu B:441 - Lys B:442   [ RasMol ]  
    Leu C:406 - Gln C:407   [ RasMol ]  
    Leu C:414 - Glu C:415   [ RasMol ]  
    Leu C:474 - Lys C:475   [ RasMol ]  
    Leu C:482 - Gly C:483   [ RasMol ]  
    Leu D:414 - Glu D:415   [ RasMol ]  
    Leu D:474 - Lys D:475   [ RasMol ]  
    Leu D:482 - Gly D:483   [ RasMol ]  
    Leu E:474 - Lys E:475   [ RasMol ]  
    Leu E:482 - Gly E:483   [ RasMol ]  
    Leu F:406 - Gln F:407   [ RasMol ]  
    Leu F:474 - Lys F:475   [ RasMol ]  
    Leu F:482 - Gly F:483   [ RasMol ]  
    Lys A:475 - Ala A:476   [ RasMol ]  
    Lys B:430 - His B:431   [ RasMol ]  
    Lys B:475 - Ala B:476   [ RasMol ]  
    Lys B:477 - Pro B:478   [ RasMol ]  
    Lys B:479 - Phe B:480   [ RasMol ]  
    Lys B:484 - Arg B:485   [ RasMol ]  
    Lys C:484 - Arg C:485   [ RasMol ]  
    Lys D:479 - Phe D:480   [ RasMol ]  
    Lys E:475 - Ala E:476   [ RasMol ]  
    Lys E:479 - Phe E:480   [ RasMol ]  
    Lys F:475 - Ala F:476   [ RasMol ]  
    Lys F:484 - Arg F:485   [ RasMol ]  
    Phe A:420 - Val A:421   [ RasMol ]  
    Phe A:480 - Thr A:481   [ RasMol ]  
    Phe B:420 - Val B:421   [ RasMol ]  
    Phe D:480 - Thr D:481   [ RasMol ]  
    Phe E:420 - Val E:421   [ RasMol ]  
    Phe E:480 - Thr E:481   [ RasMol ]  
    Phe F:480 - Thr F:481   [ RasMol ]  
    Pro A:15 - Val A:16   [ RasMol ]  
    Pro A:410 - Gly A:411   [ RasMol ]  
    Pro B:15 - Val B:16   [ RasMol ]  
    Pro B:17 - Val B:18   [ RasMol ]  
    Pro B:410 - Gly B:411   [ RasMol ]  
    Pro B:436 - Lys B:437   [ RasMol ]  
    Pro C:15 - Val C:16   [ RasMol ]  
    Pro C:410 - Gly C:411   [ RasMol ]  
    Pro C:434 - Ala C:435   [ RasMol ]  
    Pro C:478 - Lys C:479   [ RasMol ]  
    Pro D:410 - Gly D:411   [ RasMol ]  
    Pro D:436 - Lys D:437   [ RasMol ]  
    Pro E:409 - Pro E:410   [ RasMol ]  
    Pro E:410 - Gly E:411   [ RasMol ]  
    Pro E:434 - Ala E:435   [ RasMol ]  
    Pro F:15 - Val F:16   [ RasMol ]  
    Pro F:478 - Lys F:479   [ RasMol ]  
    Ser D:423 - Gln D:424   [ RasMol ]  
    Thr A:10 - Val A:11   [ RasMol ]  
    Thr A:417 - Tyr A:418   [ RasMol ]  
    Thr A:422 - Ser A:423   [ RasMol ]  
    Thr A:481 - Leu A:482   [ RasMol ]  
    Thr B:10 - Val B:11   [ RasMol ]  
    Thr B:422 - Ser B:423   [ RasMol ]  
    Thr C:10 - Val C:11   [ RasMol ]  
    Thr C:413 - Leu C:414   [ RasMol ]  
    Thr C:417 - Tyr C:418   [ RasMol ]  
    Thr C:422 - Ser C:423   [ RasMol ]  
    Thr C:481 - Leu C:482   [ RasMol ]  
    Thr D:10 - Val D:11   [ RasMol ]  
    Thr D:413 - Leu D:414   [ RasMol ]  
    Thr D:417 - Tyr D:418   [ RasMol ]  
    Thr E:422 - Ser E:423   [ RasMol ]  
    Thr F:413 - Leu F:414   [ RasMol ]  
    Thr F:417 - Tyr F:418   [ RasMol ]  
    Tyr A:12 - Leu A:13   [ RasMol ]  
    Tyr D:12 - Leu D:13   [ RasMol ]  
    Tyr D:418 - Arg D:419   [ RasMol ]  
    Val A:11 - Tyr A:12   [ RasMol ]  
    Val A:421 - Thr A:422   [ RasMol ]  
    Val B:11 - Tyr B:12   [ RasMol ]  
    Val B:16 - Pro B:17   [ RasMol ]  
    Val B:18 - Ser B:19   [ RasMol ]  
    Val C:11 - Tyr C:12   [ RasMol ]  
    Val C:18 - Ser C:19   [ RasMol ]  
    Val E:16 - Pro E:17   [ RasMol ]  
    Val E:18 - Ser E:19   [ RasMol ]  
    Val F:421 - Thr F:422   [ RasMol ]  
 
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  3j6r
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  Q4VRM0_HPV16 | Q4VRM0
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  VL1_HPV16 | P03101
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q4VRM0_HPV16 | Q4VRM0: 3j7g 3j8v 3j8w 3j8z
        VL1_HPV16 | P03101: 1dzl 3j7g 3j8v 3j8w 3j8z 3jba 5kep 5keq
UniProtKB/TrEMBL
        Q4VRM0_HPV16 | Q4VRM0: 2r5h

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3J6R)