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(-) Description

Title :  CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS PROTEIN SARZ IN MIXED DISULFIDE FORM
 
Authors :  C. B. Poor, E. Duguid, P. A. Rice, C. He
Date :  10 Jun 09  (Deposition) - 07 Jul 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Helix-Turn-Helix, Cysteine Disulfide, Marr-Family Transcriptional Regulator, Dna-Binding, Transcription, Transcription Regulation, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Poor, P. R. Chen, E. Duguid, P. A. Rice, C. He
Crystal Structures Of The Reduced, Sulfenic Acid, And Mixed Disulfide Forms Of Sarz, A Redox Active Global Regulator In Staphylococcus Aureus.
J. Biol. Chem. V. 284 23517 2009
PubMed-ID: 19586910  |  Reference-DOI: 10.1074/JBC.M109.015826

(-) Compounds

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REGULATOR SARZ
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 7-142
    Gene: NWMN_2286
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 426430
    Strain: NEWMAN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2BT63Ligand/IonBENZENETHIOL
3GOL5Ligand/IonGLYCEROL
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BT61Ligand/IonBENZENETHIOL
3GOL3Ligand/IonGLYCEROL
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BT62Ligand/IonBENZENETHIOL
3GOL2Ligand/IonGLYCEROL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:42 , MET A:45 , SER A:113 , LYS B:10 , CYS B:13 , PHE B:14BINDING SITE FOR RESIDUE BT6 A 1
02AC2SOFTWARELEU A:36 , THR A:37 , LEU A:72 , LYS A:75 , LEU A:76 , LYS A:79BINDING SITE FOR RESIDUE ACT A 143
03AC3SOFTWAREGLU A:111 , LYS A:115 , ARG D:61BINDING SITE FOR RESIDUE GOL A 144
04AC4SOFTWARELEU B:36 , THR B:37 , GLY B:40 , LEU B:76 , LYS B:79BINDING SITE FOR RESIDUE ACT B 1
05AC5SOFTWAREHOH A:152 , LYS B:56 , GLY B:59 , GLU B:60 , LEU B:64 , ASP B:65 , SER B:66 , ASN B:121 , ILE B:122 , SER B:123 , HOH B:147 , HOH B:159BINDING SITE FOR RESIDUE GOL B 143
06AC6SOFTWAREVAL A:114 , PHE A:117 , ASN A:118 , HIS B:5 , SER B:9BINDING SITE FOR RESIDUE GOL B 144
07AC7SOFTWARELYS C:10 , CYS C:13 , PHE C:14 , TYR D:41 , ILE D:42 , MET D:45 , SER D:113BINDING SITE FOR RESIDUE BT6 C 1
08AC8SOFTWARELEU C:36 , THR C:37 , GLY C:40 , LEU C:76 , LYS C:79BINDING SITE FOR RESIDUE ACT C 143
09AC9SOFTWARELYS C:56 , GLY C:59 , GLU C:60 , LEU C:64 , ASP C:65 , SER C:66 , ASN C:121 , ILE C:122 , HOH C:145 , HOH D:148BINDING SITE FOR RESIDUE GOL C 144
10BC1SOFTWAREILE C:23 , TYR C:27 , PHE C:120 , CYS D:13 , PHE D:137BINDING SITE FOR RESIDUE BT6 D 1
11BC2SOFTWARELEU D:36 , THR D:37 , GLY D:40 , LEU D:72 , LYS D:75 , LYS D:79BINDING SITE FOR RESIDUE ACT D 143
12BC3SOFTWAREARG A:61 , HOH A:148 , HOH A:156 , VAL D:114 , LYS D:115BINDING SITE FOR RESIDUE GOL D 144

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HSR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HSR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HSR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HSR)

(-) Exons   (0, 0)

(no "Exon" information available for 3HSR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with A0A0H3KA72_S | A0A0H3KA72 from UniProtKB/TrEMBL  Length:148

    Alignment length:137
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       
         A0A0H3KA72_S     6 SYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
               SCOP domains d3hsra_ A: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................hhh.hhhhhhhhhhh....eeehhhhhhhhh.hhhhhhhhhhhhhhh..eeee.-------.eeeehhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hsr A   6 MYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR-------LQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
                                    15        25        35        45        55        65        75        85|       95       105       115       125       135       
                                                                                                           86      94                                                


Chain B from PDB  Type:PROTEIN  Length:133
 aligned with A0A0H3KA72_S | A0A0H3KA72 from UniProtKB/TrEMBL  Length:148

    Alignment length:140
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142
         A0A0H3KA72_S     3 VENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
               SCOP domains d3hsrb_ B: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee.-------.eeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hsr B   3 GSHMYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR-------LQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
                                    12        22        32        42        52        62        72        82   |     - |     102       112       122       132       142
                                                                                                              86      94                                                


Chain C from PDB  Type:PROTEIN  Length:133
 aligned with A0A0H3KA72_S | A0A0H3KA72 from UniProtKB/TrEMBL  Length:148

    Alignment length:140
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142
         A0A0H3KA72_S     3 VENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
               SCOP domains d3hsrc_ C: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhh..eee..-------..eeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hsr C   3 GSHMYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR-------LQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
                                    12        22        32        42        52        62        72        82   |     - |     102       112       122       132       142
                                                                                                              86      94                                                


Chain D from PDB  Type:PROTEIN  Length:130
 aligned with A0A0H3KA72_S | A0A0H3KA72 from UniProtKB/TrEMBL  Length:148

    Alignment length:138
                                    14        24        34        44        54        64        74        84        94       104       114       124       134        
         A0A0H3KA72_S     5 NSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
               SCOP domains d3hsrd_ D: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......eehhhhhhhhh.hhhhhhhhhhhhhhh..eee.--------.eeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3hsr D   5 HMYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT--------LQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF 142
                                    14        24        34        44        54        64        74        84|       94       104       114       124       134        
                                                                                                           85       94
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HSR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HSR)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3HSR)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3KA72_S | A0A0H3KA72: 3hrm 3hse 4gxo

(-) Related Entries Specified in the PDB File

3hrm THE SAME PROTEIN WITH THE LONE AND REACTIVE CYSTEINE OXIDIZED TO SULFENIC ACID.
3hse THE SAME PROTEIN WITH THE LONE AND REACTIVE CYSTEINE IN THE REDUCED FORM.