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(-) Description

Title :  CRYSTAL STRUCTURE OF HBPS
 
Authors :  D. Ortiz De Orue Lucana, G. Bogel, P. Zou, M. R. Groves
Date :  06 Jan 09  (Deposition) - 20 Jan 09  (Release) - 24 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Haem Binding, Heme Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Ortiz De Orue Lucana, G. Bogel, P. Zou, M. R. Groves
The Oligomeric Assembly Of The Novel Haem-Degrading Protein Hbps Is Essential For Interaction With Its Cognate Two-Component Sensor Kinase
J. Mol. Biol. V. 386 1108 2009
PubMed-ID: 19244623  |  Reference-DOI: 10.1016/J.JMB.2009.01.017
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - EXTRACELLULAR HAEM-BINDING PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HBPS
    Organism Scientific: STREPTOMYCES RETICULI
    Organism Taxid: 1926
    Synonym: HBPS

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1FE8Ligand/IonFE (III) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:75 , SER A:79 , ALA A:135BINDING SITE FOR RESIDUE FE A 157
2AC2SOFTWAREGLN B:75 , SER B:79 , ALA B:135 , HOH B:383BINDING SITE FOR RESIDUE FE B 157
3AC3SOFTWAREGLN C:75 , SER C:79 , ILE D:110BINDING SITE FOR RESIDUE FE C 157
4AC4SOFTWAREGLN D:75 , SER D:79 , ALA D:135BINDING SITE FOR RESIDUE FE D 157
5AC5SOFTWAREGLN E:75 , SER E:79 , ALA E:135BINDING SITE FOR RESIDUE FE E 157
6AC6SOFTWAREILE E:110 , GLN G:75 , SER G:79 , ALA G:135BINDING SITE FOR RESIDUE FE E 158
7AC7SOFTWAREGLN F:75 , SER F:79 , ALA F:135 , HOH F:705BINDING SITE FOR RESIDUE FE F 157
8AC8SOFTWAREILE A:110 , GLN H:75 , SER H:79 , ALA H:135BINDING SITE FOR RESIDUE FE H 157

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FPV)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:155 -His A:156
2Gly E:155 -His E:156
3Leu G:154 -Gly G:155

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FPV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FPV)

(-) Exons   (0, 0)

(no "Exon" information available for 3FPV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeehhhhhhhhhhhhhhhhhhh....eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhh........eeeeee..eeeeeeeee...hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv A  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain B from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeehhhhhhhhhhhhhhhhhhh....eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhh........eeeeee..eeeeeeeee...hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv B  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain C from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeehhhhhhhhhhhhhhhhhh.....eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........eeeeee..eeeeeeeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv C  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain D from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeehhhhhhhhhhhhhhhhhh.....eeeeee....eeeeee......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh........eeeeee..eeeeeeeee...hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv D  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain E from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeehhhhhhhhhhhhhhhhhhh....eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhh..........eeeeee..eeeeeeeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv E  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain F from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeehhhhhhhhhhhhhhhhhhh....eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhh........eeeeee..eeeeeeeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv F  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain G from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeehhhhhhhhhhhhhhhhhh.....eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhh........eeeeee..eeeeeeeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv G  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain H from PDB  Type:PROTEIN  Length:141
 aligned with Q9RIM2_STRRE | Q9RIM2 from UniProtKB/TrEMBL  Length:188

    Alignment length:141
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187 
         Q9RIM2_STRRE    48 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 188
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeehhhhhhhhhhhhhhhhhh.....eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........eeeeee..eeeeeeeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpv H  16 VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTSELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH 156
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FPV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FPV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FPV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3FPV)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9RIM2_STRRE | Q9RIM2: 3fpw 4bmw

(-) Related Entries Specified in the PDB File

3fpw HBPS WITH BOUND IRON