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(-) Description

Title :  CRYSTAL STRUCTURE OF MULTIDRUG BINDING TRANSCRIPTIONAL REGULATOR LMRR COMPLEXED WITH DAUNOMYCIN
 
Authors :  P. K. Madoori, H. Agustiandari, A. J. M. Driessen, A. -M. W. H. Thunnisse
Date :  12 Nov 08  (Deposition) - 30 Dec 08  (Release) - 09 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Winged Helix Turn Helix, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. K. Madoori, H. Agustiandari, A. J. Driessen, A. M. Thunnissen
Structure Of The Transcriptional Regulator Lmrr And Its Mechanism Of Multidrug Recognition.
Embo J. V. 28 156 2009
PubMed-ID: 19096365  |  Reference-DOI: 10.1038/EMBOJ.2008.263

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: LACTOCOCCUS LACTIS
    Expression System Plasmid: PNSC8048
    Expression System Strain: NZ9000
    Expression System Taxid: 1358
    Expression System Vector Type: PLASMID
    Gene: LMRR
    Organism Scientific: LACTOCOCCUS LACTIS SUBSP. CREMORIS
    Organism Taxid: 416870
    Strain: MG1363
    Synonym: TRANSCRIPTION REGULATOR LMRR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1DM11Ligand/IonDAUNOMYCIN

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:8 , VAL A:15 , MET A:89 , PHE A:93 , TRP A:96 , HOH A:147 , VAL B:15 , TRP B:96BINDING SITE FOR RESIDUE DM1 A 127

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F8F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3F8F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F8F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F8F)

(-) Exons   (0, 0)

(no "Exon" information available for 3F8F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with A2RI36_LACLM | A2RI36 from UniProtKB/TrEMBL  Length:116

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         A2RI36_LACLM     1 MAEIPKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDKIIENLEANKKSEAIK 116
               SCOP domains d3f8fa_ A: automated matches                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeee...--....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8f A   1 MAEIPKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDE--GGRRKYYRLTEIGHENMRLAFESWSRVDKIIENLEANKKSEAIK 116
                                    10        20        30        40        50        60        70  |     80        90       100       110      
                                                                                                70 73                                           


Chain B from PDB  Type:PROTEIN  Length:111
 aligned with A2RI36_LACLM | A2RI36 from UniProtKB/TrEMBL  Length:116

    Alignment length:111
                                    14        24        34        44        54        64        74        84        94       104       114 
         A2RI36_LACLM     5 PKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDKIIENLEANKKSEAI 115
               SCOP domains d3f8fb_ B: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhhhh..eeeeee.......eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3f8f B   5 PKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDKIIENLEANKKSEAI 115
                                    14        24        34        44        54        64        74        84        94       104       114
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3F8F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F8F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3F8F)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A2RI36_LACLM | A2RI36: 3f8b 3f8c 4zzd

(-) Related Entries Specified in the PDB File

3f8b LMRR IN DRUG FREE STATE
3f8c