Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HTHEM2(UNDECAN-2-ONE-COA) COMPLEX
 
Authors :  H. Xu, W. Gong
Date :  04 Nov 08  (Deposition) - 18 Aug 09  (Release) - 18 Aug 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Hotdog Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Cao, H. Xu, H. Zhao, W. Gong, D. Dunaway-Mariano
The Mechanisms Of Human Hotdog-Fold Thioesterase 2 (Hthem2) Substrate Recognition And Catalysis Illuminated By A Structure And Function Based Analysis
Biochemistry V. 48 1293 2009
PubMed-ID: 19170545  |  Reference-DOI: 10.1021/BI801879Z
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIOESTERASE SUPERFAMILY MEMBER 2
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET22B
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 27)

Asymmetric Unit (4, 27)
No.NameCountTypeFull Name
1CL7Ligand/IonCHLORIDE ION
2COA8Ligand/IonCOENZYME A
3P6G4Ligand/IonHEXAETHYLENE GLYCOL
4UOC8Ligand/IonUNDECAN-2-ONE
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2COA4Ligand/IonCOENZYME A
3P6G2Ligand/IonHEXAETHYLENE GLYCOL
4UOC4Ligand/IonUNDECAN-2-ONE
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2COA4Ligand/IonCOENZYME A
3P6G2Ligand/IonHEXAETHYLENE GLYCOL
4UOC4Ligand/IonUNDECAN-2-ONE

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:50 , HIS A:56 , GLY A:57 , UOC B:149 , HOH B:187BINDING SITE FOR RESIDUE CL A 151
02AC2SOFTWAREASN C:50 , GLY C:57 , UOC D:149 , COA D:150 , HOH D:175BINDING SITE FOR RESIDUE CL C 151
03AC3SOFTWAREUOC C:149 , COA C:150 , HOH C:164 , ASN D:50 , HIS D:56 , GLY D:57BINDING SITE FOR RESIDUE CL D 151
04AC4SOFTWAREASN E:50 , GLY E:57 , UOC F:149 , COA F:150 , HOH F:190BINDING SITE FOR RESIDUE CL E 151
05AC5SOFTWAREUOC E:149 , COA E:150 , HOH E:164 , HOH E:165 , ASN F:50 , GLY F:57BINDING SITE FOR RESIDUE CL F 151
06AC6SOFTWAREASN G:50 , HIS G:56 , GLY G:57 , HOH H:158BINDING SITE FOR RESIDUE CL G 151
07AC7SOFTWAREUOC G:149 , HOH G:159 , ASN H:50 , GLY H:57BINDING SITE FOR RESIDUE CL H 151
08AC8SOFTWAREMET A:15 , ASN A:66 , MET A:70 , LEU A:73 , GLY A:81 , SER A:83 , LYS A:136 , COA A:150 , HOH A:1276 , ASN B:50BINDING SITE FOR RESIDUE UOC A 149
09AC9SOFTWAREVAL A:82 , SER A:83 , HIS A:137 , GLY A:139 , UOC A:149 , TYR B:90 , MET B:91 , SER B:92 , PRO B:93 , LYS C:108 , GLY C:110 , LYS C:111 , THR C:112 , LEU C:113 , PHE C:115 , HOH C:163 , HOH C:606 , HOH C:1268 , ARG H:19BINDING SITE FOR RESIDUE COA A 150
10BC1SOFTWAREASN A:50 , ALA A:51 , CL A:151 , GLY B:81 , VAL B:82 , LYS B:136 , COA B:150 , P6G B:1001BINDING SITE FOR RESIDUE UOC B 149
11BC2SOFTWARETYR A:90 , MET A:91 , SER A:92 , PRO A:93 , HOH A:335 , SER B:83 , HIS B:137 , UOC B:149 , LYS D:108 , GLY D:110 , LYS D:111 , THR D:112 , LEU D:113 , PHE D:115 , HOH D:298 , HOH D:586 , HOH D:633BINDING SITE FOR RESIDUE COA B 150
12BC3SOFTWAREGLY C:81 , VAL C:82 , LYS C:136 , COA C:150 , HOH C:611 , ASN D:50 , CL D:151BINDING SITE FOR RESIDUE UOC C 149
13BC4SOFTWARELYS A:108 , GLY A:110 , LYS A:111 , THR A:112 , LEU A:113 , PHE A:115 , HOH A:157 , HOH A:287 , HOH A:332 , HOH A:473 , HOH A:1172 , HOH A:1192 , SER C:83 , HIS C:137 , GLY C:139 , UOC C:149 , LEU D:55 , TYR D:90 , MET D:91 , SER D:92 , PRO D:93 , LYS D:95 , CL D:151 , HOH D:153 , HOH D:357BINDING SITE FOR RESIDUE COA C 150
14BC5SOFTWAREASN C:50 , CL C:151 , GLY D:81 , LYS D:136 , COA D:150 , HOH D:338BINDING SITE FOR RESIDUE UOC D 149
15BC6SOFTWARELYS B:108 , GLY B:110 , LYS B:111 , THR B:112 , LEU B:113 , PHE B:115 , HOH B:154 , HOH B:186 , HOH B:210 , HOH B:682 , HOH B:750 , HOH B:1080 , HOH B:1233 , TYR C:90 , MET C:91 , SER C:92 , PRO C:93 , CL C:151 , HOH C:162 , SER D:83 , HIS D:137 , UOC D:149 , ARG E:19 , GLU F:46BINDING SITE FOR RESIDUE COA D 150
16BC7SOFTWAREASN E:66 , THR E:69 , GLY E:81 , LYS E:136 , COA E:150 , ASN F:50 , CL F:151BINDING SITE FOR RESIDUE UOC E 149
17BC8SOFTWARESER E:83 , HIS E:137 , UOC E:149 , TYR F:90 , MET F:91 , SER F:92 , PRO F:93 , CL F:151 , HOH F:155 , HOH F:1274 , LYS G:108 , GLY G:110 , LYS G:111 , THR G:112 , LEU G:113 , PHE G:115 , HOH G:158 , HOH G:229 , HOH G:524 , HOH G:649 , HOH G:1123 , HOH G:1197BINDING SITE FOR RESIDUE COA E 150
18BC9SOFTWAREASN E:50 , ALA E:51 , CL E:151 , P6G E:1001 , GLY F:81 , LYS F:136 , COA F:150BINDING SITE FOR RESIDUE UOC F 149
19CC1SOFTWARETYR E:90 , MET E:91 , SER E:92 , PRO E:93 , LYS E:95 , CL E:151 , HOH E:213 , SER F:83 , HIS F:137 , GLY F:139 , UOC F:149 , LYS H:108 , GLY H:110 , LYS H:111 , THR H:112 , LEU H:113 , PHE H:115 , HOH H:350 , HOH H:354 , HOH H:489 , HOH H:947 , HOH H:1272BINDING SITE FOR RESIDUE COA F 150
20CC2SOFTWAREPRO G:80 , GLY G:81 , LYS G:136 , COA G:150 , P6G G:1001 , ASN H:50 , CL H:151BINDING SITE FOR RESIDUE UOC G 149
21CC3SOFTWARELYS E:108 , GLY E:110 , LYS E:111 , THR E:112 , LEU E:113 , PHE E:115 , HOH E:161 , HOH E:262 , HOH E:448 , HOH E:678 , HOH E:893 , HOH E:1202 , SER G:83 , HIS G:137 , GLY G:139 , UOC G:149 , TYR H:90 , MET H:91 , SER H:92 , PRO H:93 , LYS H:95 , HOH H:159BINDING SITE FOR RESIDUE COA G 150
22CC4SOFTWAREASN G:50 , MET H:15 , GLY H:81 , LYS H:136 , COA H:150 , HOH H:468 , HOH H:1204BINDING SITE FOR RESIDUE UOC H 149
23CC5SOFTWARELYS F:108 , GLY F:110 , LYS F:111 , THR F:112 , LEU F:113 , PHE F:115 , HOH F:478 , HOH F:627 , HOH F:1259 , TYR G:90 , MET G:91 , SER G:92 , PRO G:93 , HOH G:421 , VAL H:82 , SER H:83 , HIS H:137 , UOC H:149BINDING SITE FOR RESIDUE COA H 150
24CC6SOFTWAREALA A:51 , VAL B:11 , MET B:15 , ASN B:20 , UOC B:149BINDING SITE FOR RESIDUE P6G B 1001
25CC7SOFTWAREVAL C:11 , ASN C:20 , ALA D:51BINDING SITE FOR RESIDUE P6G C 1001
26CC8SOFTWAREALA E:51 , MET F:15 , ALA F:18 , ASN F:20 , GLU F:22 , UOC F:149BINDING SITE FOR RESIDUE P6G E 1001
27CC9SOFTWAREVAL G:11 , ALA G:14 , MET G:15 , ASN G:20 , GLU G:22 , UOC G:149 , ALA H:51BINDING SITE FOR RESIDUE P6G G 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F5O)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu D:138 -Gly D:139

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F5O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F5O)

(-) Exons   (3, 24)

Asymmetric Unit (3, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002300481ENSE00001174688chr6:24667299-24667572274ACO13_HUMAN1-27278A:2-27
B:4-27
C:3-27
D:3-27
E:2-27
F:2-27
G:4-27
H:2-27
26
24
25
25
26
26
24
26
1.3ENST000002300483ENSE00001968027chr6:24698111-24698295185ACO13_HUMAN28-89628A:28-89
B:28-89
C:28-89
D:28-89
E:28-89
F:28-89
G:28-89
H:28-89
62
62
62
62
62
62
62
62
1.4ENST000002300484ENSE00001960410chr6:24701687-24701942256ACO13_HUMAN89-140528A:89-139
B:89-139
C:89-139
D:89-139
E:89-139
F:89-139
G:89-139
H:89-139
51
51
51
51
51
51
51
51

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:138
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:138
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        
          ACO13_HUMAN     2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5oa_ A: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...hhhhhhh..eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:2-27     Exon 1.3  PDB: A:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------Exon 1.4  PDB: A:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o A   2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        

Chain B from PDB  Type:PROTEIN  Length:136
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:136
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      
          ACO13_HUMAN     4 MTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5ob_ B: automated matches                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..hhhhhh..eeeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:4-27   Exon 1.3  PDB: B:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.4  PDB: B:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o B   4 MTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      

Chain C from PDB  Type:PROTEIN  Length:137
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:137
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       
          ACO13_HUMAN     3 SMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5oc_ C: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.hhhhhhh..eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: C:3-27    Exon 1.3  PDB: C:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------Exon 1.4  PDB: C:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o C   3 SMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       

Chain D from PDB  Type:PROTEIN  Length:137
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:137
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       
          ACO13_HUMAN     3 SMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5od_ D: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhh..eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:3-27    Exon 1.3  PDB: D:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------Exon 1.4  PDB: D:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o D   3 SMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       

Chain E from PDB  Type:PROTEIN  Length:138
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:138
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        
          ACO13_HUMAN     2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5oe_ E: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhh..eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: E:2-27     Exon 1.3  PDB: E:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------Exon 1.4  PDB: E:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o E   2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        

Chain F from PDB  Type:PROTEIN  Length:138
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:138
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        
          ACO13_HUMAN     2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5of_ F: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhh..eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: F:2-27     Exon 1.3  PDB: F:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------Exon 1.4  PDB: F:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o F   2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        

Chain G from PDB  Type:PROTEIN  Length:136
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:136
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      
          ACO13_HUMAN     4 MTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5og_ G: automated matches                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..hhhhhhh..eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: G:4-27   Exon 1.3  PDB: G:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.4  PDB: G:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o G   4 MTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      

Chain H from PDB  Type:PROTEIN  Length:138
 aligned with ACO13_HUMAN | Q9NPJ3 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:138
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        
          ACO13_HUMAN     2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
               SCOP domains d3f5oh_ H: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhhh..eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhh.......eeeeeeeee........eeeeeeeeeee...eeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: H:2-27     Exon 1.3  PDB: H:28-89 UniProt: 28-89                         -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------Exon 1.4  PDB: H:89-139 UniProt: 89-140             Transcript 1 (2)
                 3f5o H   2 TSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3F5O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F5O)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (ACO13_HUMAN | Q9NPJ3)
molecular function
    GO:0047617    acyl-CoA hydrolase activity    Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0035338    long-chain fatty-acyl-CoA biosynthetic process    The chemical reactions and pathways resulting in the formation of a long-chain fatty-acyl-CoA any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. Long-chain fatty-acyl-CoAs have chain lengths of C13 or more.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005819    spindle    The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    COA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    P6G  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UOC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Leu D:138 - Gly D:139   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3f5o
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ACO13_HUMAN | Q9NPJ3
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  ACO13_HUMAN | Q9NPJ3
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACO13_HUMAN | Q9NPJ32f0x 2h4u

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3F5O)