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(-) Description

Title :  CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM CALCIUM DEPENDENT PROTEIN KINASE CGD7_1840 IN PRESENCE OF INDIRUBIN E804
 
Authors :  A. K. Wernimont, J. Lew, G. Wasney, I. Kozieradzki, D. Cossar, M. Vedadi A. Bochkarev, C. H. Arrowsmith, M. Sundstrom, J. Weigelt, A. M. Edward J. D. Artz, M. Amani, Structural Genomics Consortium (Sgc)
Date :  31 Oct 08  (Deposition) - 23 Dec 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Calcium Dependent Protein Kinase, Structural Genomics Consortium, Atp-Binding, Kinase, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Transferase, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. K. Wernimont, J. Lew, G. Wasney, I. Kozieradzki, D. Cossar, M. Vedadi, A. Bochkarev, C. H. Arrowsmith, M. Sundstrom, J. Weigelt, A. M. Edwards, R. Hui, J. D. Artz, M. Amani
Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE WITH A KINASE DOMAIN AND 4 CALMODULIN LIKE EF HANDS
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP15-MHL
    Expression System StrainDH5A
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCGD7_1840
    Organism ScientificCRYPTOSPORIDIUM PARVUM IOWA II
    Organism Taxid353152

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1DRK1Ligand/Ion3-({[(3S)-3,4-DIHYDROXYBUTYL]OXY}AMINO)-1H,2'H-2,3'-BIINDOL-2'-ONE
2GOL4Ligand/IonGLYCEROL
3SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1DRK2Ligand/Ion3-({[(3S)-3,4-DIHYDROXYBUTYL]OXY}AMINO)-1H,2'H-2,3'-BIINDOL-2'-ONE
2GOL8Ligand/IonGLYCEROL
3SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:7 , ILE A:34 , ARG A:36 , ALA A:55 , LYS A:57 , MET A:102 , GLU A:103 , LEU A:104 , CYS A:105 , GLU A:109 , GLU A:152 , LEU A:155 , PRO A:227 , HOH A:465BINDING SITE FOR RESIDUE DRK A 1
2AC2SOFTWAREHIS A:82 , SER A:134 , TYR A:138 , LYS A:141 , LEU A:277BINDING SITE FOR RESIDUE GOL A 295
3AC3SOFTWAREHOH A:8 , HIS A:140 , PRO A:203 , GLU A:204 , GLU A:207 , GLN A:269 , THR A:272BINDING SITE FOR RESIDUE GOL A 296
4AC4SOFTWAREHIS A:116 , TYR A:215 , PRO A:223 , PHE A:241 , THR A:242BINDING SITE FOR RESIDUE GOL A 297
5AC5SOFTWAREARG A:54 , LYS A:78 , ASP A:81 , TYR A:89 , GLU A:90 , HOH A:325 , HOH A:469BINDING SITE FOR RESIDUE GOL A 298

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F3Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3F3Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F3Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F3Z)

(-) Exons   (0, 0)

(no "Exon" information available for 3F3Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:272
 aligned with Q5CYL9_CRYPI | Q5CYL9 from UniProtKB/TrEMBL  Length:676

    Alignment length:272
                                   210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  
         Q5CYL9_CRYPI   201 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLSSSPRNLL 472
               SCOP domains d3f3za_ A: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 3f3zA01 A:23-104 Phosphorylase Kinase; domain 1                                   3f3zA02 A:105-294 Transferase(Phosphotransferase) domain 1                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhheeeeeeeeee..eeeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhh........eeeeee...eeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee........eee......ee.................hhhhhh.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh........hhhhhh.hhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f3z A  23 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDsEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLSSSPRNLL 294
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292  
                                                                                                                                                                                                                                         230-SEP                                                            

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F3Z)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q5CYL9_CRYPI | Q5CYL9)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:2001070    starch binding    Interacting selectively and non-covalently with starch.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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 Related Entries

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        Q5CYL9_CRYPI | Q5CYL92qg5

(-) Related Entries Specified in the PDB File

2qg5 CRYPTOSPORIDIUM PARVUM CALCIUM DEPENDENT PROTEIN KINASE, APO FORM