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(-) Description

Title :  CRYSTAL STRUCTURE AND ANTI-TUMOR ACTIVITY OF LZ-8 FROM THE FUNGUS GANODERMA LUCIDIUM
 
Authors :  C. Z. Zhou, L. Huang, Y. X. He, R. Bao, F. Sun, C. Liang, L. Liu
Date :  30 Oct 08  (Deposition) - 15 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fungal Immunomodulatory Protein, Ganoderma Lucidium, Anti-Tumor Activity, Antitumor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Huang, F. Sun, C. Liang, Y. X. He, R. Bao, L. Liu, C. Z. Zhou
Crystal Structure Of Lz-8 From The Medicinal Fungus Ganoderma Lucidium
Proteins V. 75 524 2009
PubMed-ID: 19137616  |  Reference-DOI: 10.1002/PROT.22346

(-) Compounds

Molecule 1 - IMMUNOMODULATORY PROTEIN LING ZHI-8
    ChainsA, B
    EngineeredYES
    Expression SystemPICHIA PASTORIS
    Expression System PlasmidP819
    Expression System StrainGS115
    Expression System Taxid4922
    Expression System Vector TypePLASMID
    Organism CommonBRACKET FUNGUS
    Organism ScientificGANODERMA LUCIDUM
    Organism Taxid5315
    SynonymLZ-8

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3F3H)

(-) Sites  (0, 0)

(no "Site" information available for 3F3H)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F3H)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asn A:29 -Pro A:30
2Asn B:29 -Pro B:30

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:110
 aligned with LZ8_GANLU | P14945 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:110
                                    11        21        31        41        51        61        71        81        91       101       111
            LZ8_GANLU     2 SDTALIFRLAWDVKKLSFDYTPNWGRGNPNNFIDTVTFPKVLTDKAYTYRVAVSGRNLGVKPSYAVESDGSQKVNFLEYNSGYGIADTNTIQVFVVDPDTNNDFIIAQWN 111
               SCOP domains d3f3ha_ A: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhheeeee...eeee.....eeeeeee.........eeeeee..eeeeee..........eeeehhhhh....ee....eeeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3f3h A   2 SDTALIFRLAWDVKKLSFDYTPNWGRGNPNNFIDTVTFPKVLTDKAYTYRVAVSGRNLGVKPSYAVESDGSQKVNFLEYNSGYGIADTNTIQVFVVDPDTNNDFIIAQWN 111
                                    11        21        31        41        51        61        71        81        91       101       111

Chain B from PDB  Type:PROTEIN  Length:109
 aligned with LZ8_GANLU | P14945 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:109
                                    12        22        32        42        52        62        72        82        92       102         
            LZ8_GANLU     3 DTALIFRLAWDVKKLSFDYTPNWGRGNPNNFIDTVTFPKVLTDKAYTYRVAVSGRNLGVKPSYAVESDGSQKVNFLEYNSGYGIADTNTIQVFVVDPDTNNDFIIAQWN 111
               SCOP domains d3f3hb_ B: automated matches                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhheeeee...eeee.....eeeeeee.........eeeeee..eeeeee..........eeeehhhhh....ee....eeeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3f3h B   3 DTALIFRLAWDVKKLSFDYTPNWGRGNPNNFIDTVTFPKVLTDKAYTYRVAVSGRNLGVKPSYAVESDGSQKVNFLEYNSGYGIADTNTIQVFVVDPDTNNDFIIAQWN 111
                                    12        22        32        42        52        62        72        82        92       102         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F3H)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (LZ8_GANLU | P14945)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
biological process
    GO:0002682    regulation of immune system process    Any process that modulates the frequency, rate, or extent of an immune system process.

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    Asn A:29 - Pro A:30   [ RasMol ]  
    Asn B:29 - Pro B:30   [ RasMol ]  
 

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