Chain A from PDB Type:PROTEIN Length:146
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:149
17 27 37 47 57 67 77 87 97 107 117 127 137 147
Q5LLB9_RUEPO 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKT 156
SCOP domains d3e6ma_ A: automated matches SCOP domains
CATH domains 3e6mA00 A:8-156 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhheeehhhhhhhh..hhhhhhhhhhhhhhh..eee..---.....eeeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m A 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSI---DQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKT 156
17 27 37 47 57 67 77 87 97| | 107 117 127 137 147
76-MSE 98 102
Chain B from PDB Type:PROTEIN Length:147
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:149
19 29 39 49 59 69 79 89 99 109 119 129 139 149
Q5LLB9_RUEPO 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
SCOP domains d3e6mb_ B: automated matches SCOP domains
CATH domains 3e6mB00 B:10-158 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eehhhhhhhh..hhhhhhhhhhhhhhh..eee....--....eeeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m B 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSISD--QRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
19 29 39 49 59 69 | 79 89 99| | 109 119 129 139 149
76-MSE 100 |
103
Chain C from PDB Type:PROTEIN Length:146
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:149
17 27 37 47 57 67 77 87 97 107 117 127 137 147
Q5LLB9_RUEPO 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKT 156
SCOP domains d3e6mc_ C: automated matches SCOP domains
CATH domains 3e6mC00 C:8-156 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhheeehhhhhhhh..hhhhhhhhhhhhhhh..eeeeee.---.eeeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m C 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSISD---RKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKT 156
17 27 37 47 57 67 77 87 97 | |107 117 127 137 147
76-MSE 100 104
Chain D from PDB Type:PROTEIN Length:149
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:149
19 29 39 49 59 69 79 89 99 109 119 129 139 149
Q5LLB9_RUEPO 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
SCOP domains d3e6md_ D: automated matches SCOP domains
CATH domains 3e6mD00 D:10-158 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eehhhhhhhh..hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m D 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
19 29 39 49 59 69 | 79 89 99 109 119 129 139 149
76-MSE
Chain E from PDB Type:PROTEIN Length:147
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:151
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157
Q5LLB9_RUEPO 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
SCOP domains d3e6me_ E: automated matches SCOP domains
CATH domains 3e6mE00 E:8-158 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhh.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh.eeeee.----..eeeeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m E 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSIS----RKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
17 27 37 47 57 67 77 87 97 | |107 117 127 137 147 157
76-MSE 99 104
Chain F from PDB Type:PROTEIN Length:146
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:149
19 29 39 49 59 69 79 89 99 109 119 129 139 149
Q5LLB9_RUEPO 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
SCOP domains d3e6mf_ F: automated matches SCOP domains
CATH domains 3e6mF00 F:10-158 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhh.hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh...eehhhhhhhhh..hhhhhhhhhhhhhhh..eee...---.....eeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m F 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSIS---QRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
19 29 39 49 59 69 | 79 89 99 | 109 119 129 139 149
76-MSE 99 103
Chain G from PDB Type:PROTEIN Length:148
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:151
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157
Q5LLB9_RUEPO 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
SCOP domains d3e6mg_ G: automated matches SCOP domains
CATH domains 3e6mG00 G:8-158 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhh..eeeee.---...eeeeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m G 8 PKPSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSIS---QRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
17 27 37 47 57 67 77 87 97 | | 107 117 127 137 147 157
76-MSE 99 103
Chain H from PDB Type:PROTEIN Length:147
aligned with Q5LLB9_RUEPO | Q5LLB9 from UniProtKB/TrEMBL Length:158
Alignment length:149
19 29 39 49 59 69 79 89 99 109 119 129 139 149
Q5LLB9_RUEPO 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
SCOP domains d3e6mh_ H: automated matches SCOP domains
CATH domains 3e6mH00 H:10-158 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhh.hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhheehhhhhhhhh..hhhhhhhhhhhhhhh..eeeee..--...eeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3e6m H 10 PSFPYGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVmEQSTTSRTVDQLVDEGLAARSISD--QRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTDY 158
19 29 39 49 59 69 | 79 89 99| | 109 119 129 139 149
76-MSE 100 |
103
Legend: |
|
→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |