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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A POSSIBLE HXLR FAMILY TRANSCRIPTIONAL FACTOR FROM THERMOPLASMA VOLCANIUM GSS1
 
Authors :  K. Tan, C. Tesar, S. Moy, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)
Date :  11 Jun 08  (Deposition) - 05 Aug 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Apc89000, Hxlr, Transcriptional Factor, Structural Genomics, Psi-2, Midwest Center For Structural Genomics, Mcsg, Protein Structure Initiative, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, C. Tesar, S. Moy, A. Joachimiak
The Crystal Structure Of A Possible Hxlr Family Transcriptional Factor From Thermoplasma Volcanium Gss1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - POSSIBLE HXLR FAMILY TRANSCRIPTIONAL FACTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Vector Type: PLASMID
    Gene: TV1295, TVG1336486
    Organism Scientific: THERMOPLASMA VOLCANIUM
    Organism Taxid: 50339
    Strain: GSS1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:3 , TYR A:4 , GLY A:5 , ARG A:46 , SER A:54 , ARG A:90 , HOH A:123 , HOH A:135BINDING SITE FOR RESIDUE ACT A 109
2AC2SOFTWAREPRO A:13 , HIS A:19 , LYS A:24 , TYR A:25 , HOH A:111BINDING SITE FOR RESIDUE ACT A 110

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:109
 aligned with Q978X0_THEVO | Q978X0 from UniProtKB/TrEMBL  Length:117

    Alignment length:110
                                    15        25        35        45        55        65        75        85        95       105       115
         Q978X0_THEVO     6 SKACMLRYGDTEICIDPSESVLHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMPLLQYISVLDRN 115
               SCOP domains d3d f8a_ A: automated matches                                                                                  SCOP domains
               CATH domains 3df 8A00 A:-2-106 'winged helix' repressor DNA binding domain                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..e-eeee..eeeee.....hhhhhhh.hhhhhhhhhh......hhhhhhhh....hhhhhhhhhhhhhhh..eeeee...eeeeehhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3df8 A  -2 SNA-mLRYGDTEICIDPSESVLHLLGKKYTmLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGmNVRNSLmPLLQYISVLDRN 106
                              | |    6        16        26|       36        46        56        66        76        86|      |96       106
                              0 |                        27-MSE                                                      87-MSE 94-MSE        
                                1-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

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  3df8
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  Q978X0_THEVO | Q978X0
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