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(-) Description

Title :  STRUCTURE OF THE DTDP-4-KETO-L-RHAMNOSE REDUCTASE RELATED PROTEIN (OTHER FORM) FROM THERMUS THERMOPHILUS HB8
 
Authors :  J. Jeyakanthan, S. P. Kanaujia, K. Sekar, S. Satoh, Y. Kitamura, A. Ebihara, L. Chen, Z. J. Liu, B. C. Wang, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  02 Apr 08  (Deposition) - 07 Apr 09  (Release) - 07 Apr 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Thermus Thermophilus, Dtdp-4-Keto-L-Rhamnose Reductase, Plasmid, Oxidoreductase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Jeyakanthan, S. P. Kanaujia, K. Sekar, S. Satoh, Y. Kitamura, A. Ebihara, L. Chen, Z. J. Liu, B. C. Wang, C. Yokoyama, S. Kuramitsu
Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN TTHB138
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: DTDP-4-KETO-L-RHAMNOSE REDUCTASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3CQ2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CQ2)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Pro A:40 -Pro A:41
2Glu A:84 -Pro A:85
3Pro B:40 -Pro B:41
4Glu B:84 -Pro B:85
5Pro C:40 -Pro C:41
6Glu C:84 -Pro C:85
7Pro D:40 -Pro D:41
8Glu D:84 -Pro D:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CQ2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CQ2)

(-) Exons   (0, 0)

(no "Exon" information available for 3CQ2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with Q53W28_THET8 | Q53W28 from UniProtKB/TrEMBL  Length:103

    Alignment length:96
                                    16        26        36        46        56        66        76        86        96      
         Q53W28_THET8     7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
               SCOP domains d3cq2a_ A: automated matches                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh................eeeeeee..eeeeee..........hhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3cq2 A   7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRmTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
                                    16        26        36        46|       56        66        76        86        96      
                                                                   47-MSE                                                   


Chain B from PDB  Type:PROTEIN  Length:98
 aligned with Q53W28_THET8 | Q53W28 from UniProtKB/TrEMBL  Length:103

    Alignment length:98
                                    14        24        34        44        54        64        74        84        94        
         Q53W28_THET8     5 NPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
               SCOP domains d3cq2b_ B: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..ee....ee......eeeeeee..eeeeee..........hhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3cq2 B   5 NPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRmTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
                                    14        24        34        44  |     54        64        74        84        94        
                                                                     47-MSE                                                   


Chain C from PDB  Type:PROTEIN  Length:96
 aligned with Q53W28_THET8 | Q53W28 from UniProtKB/TrEMBL  Length:103

    Alignment length:96
                                    16        26        36        46        56        66        76        86        96      
         Q53W28_THET8     7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
               SCOP domains d3cq2c_ C: automated matches                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh..ee....ee......eeeeeee..eeeeee..........hhhhhhhhhhhh......eeeeee......hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3cq2 C   7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRmTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
                                    16        26        36        46|       56        66        76        86        96      
                                                                   47-MSE                                                   


Chain D from PDB  Type:PROTEIN  Length:96
 aligned with Q53W28_THET8 | Q53W28 from UniProtKB/TrEMBL  Length:103

    Alignment length:96
                                    16        26        36        46        56        66        76        86        96      
         Q53W28_THET8     7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
               SCOP domains d3cq2d_ D: automated matches                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh................eeeeeee..eeeeee..........hhhhhhhhhhhh......eeeeee......hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3cq2 D   7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRmTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
                                    16        26        36        46|       56        66        76        86        96      
                                                                   47-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CQ2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CQ2)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3CQ2)

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  Cis Peptide Bonds
    Glu A:84 - Pro A:85   [ RasMol ]  
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    Glu C:84 - Pro C:85   [ RasMol ]  
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  Q53W28_THET8 | Q53W28
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q53W28_THET8 | Q53W28: 2cu6 3cq1 3cq3

(-) Related Entries Specified in the PDB File

2cu6
3cq1 OTHER FORM OF THIS PROTEIN
3cq3 OTHER FORM OF THIS PROTEIN RELATED ID: TTK003001362.2 RELATED DB: TARGETDB