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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A MONOFUNCTIONAL PLATINUM-DNA ADDUCT, CIS-{PT(NH3)2(PYRIDINE)}2+ BOUND TO DEOXYGUANOSINE IN A DODECAMER DUPLEX
 
Authors :  K. S. Lovejoy, R. C. Todd, S. Zhang, M. S. Mccormick, J. A. D'Aquino, J. T. Reardon, A. Sancar, K. M. Giacomini, S. J. Lippard
Date :  27 Mar 08  (Deposition) - 10 Jun 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Platinum-Dna Duplex, Cisplatin, Monofunctional Pt Compound (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. S. Lovejoy, R. C. Todd, S. Zhang, M. S. Mccormick, J. A. D'Aquino, J. T. Reardon, A. Sancar, K. M. Giacomini, S. J. Lippard
Cis-Diammine(Pyridine)Chloroplatinum(Ii), A Monofunctional Platinum(Ii) Antitumor Agent: Uptake, Structure, Function, And Prospects.
Proc. Natl. Acad. Sci. Usa V. 105 8902 2008
PubMed-ID: 18579768  |  Reference-DOI: 10.1073/PNAS.0803441105
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- D(*DCP*DCP*DTP*DCP*DTP*DCP*DGP*DTP*DCP*DTP*DCP*DC)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'- D(*DGP*DGP*DAP*DGP*DAP*DCP*DGP*DAP*DGP*DAP*DGP*DG)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1C7P1Ligand/IonCIS-DIAMMINE(PYRIDINE)CHLOROPLATINUM(II)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:6 , DG A:7 , DT A:8 , HOH A:31 , DG B:16BINDING SITE FOR RESIDUE C7P A 25

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CO3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CO3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CO3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CO3)

(-) Exons   (0, 0)

(no "Exon" information available for 3CO3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:12
                                           
                  3co3 A  1 CCTCTCGTCTCC 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  3co3 B 13 GGAGACGAGAGG 24
                                    22
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CO3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CO3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CO3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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