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(-) Description

Title :  CRYSTAL STRUCTURE OF AN OSMC-LIKE HYDROPEROXIDE RESISTANCE PROTEIN (JANN_2040) FROM JANNASCHIA SP. CCS1 AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  12 Mar 08  (Deposition) - 25 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Osmc-Like Hydroperoxide Resistance Protein (Yp_509982. 1) From Jannaschia Sp. Ccs1 At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OSMC-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_509982.1, JANN_2040
    Organism Scientific: JANNASCHIA SP.
    Organism Taxid: 290400
    Strain: CCS1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1GOL16Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:24 , LYS A:25 , ARG A:27 , ASP A:47 , HOH A:264 , HOH A:283BINDING SITE FOR RESIDUE PO4 A 167
2AC2SOFTWARELYS A:82 , ARG A:83 , HOH A:260 , HOH A:303 , HOH A:304 , HOH A:308BINDING SITE FOR RESIDUE GOL A 168
3AC3SOFTWAREALA A:22 , ARG A:78 , ASP A:90 , LEU A:91 , HOH A:197 , HOH A:242BINDING SITE FOR RESIDUE GOL A 169
4AC4SOFTWARELYS A:25 , ARG A:78 , GLY A:160 , ASP A:161 , HOH A:242BINDING SITE FOR RESIDUE GOL A 170
5AC5SOFTWAREGLU A:13 , PRO A:37 , TRP A:101 , HOH A:228 , HOH A:233 , HOH A:271BINDING SITE FOR RESIDUE GOL A 171
6AC6SOFTWAREALA A:79 , ARG A:83 , SER A:123 , PRO A:124 , ASP A:125 , GLN A:130 , HOH A:183 , HOH A:189 , HOH A:308BINDING SITE FOR RESIDUE GOL A 172
7AC7SOFTWAREALA A:12 , LYS A:85 , THR A:87 , TRP A:101 , ALA A:102 , LYS A:103 , ASP A:125 , HOH A:253 , HOH A:293BINDING SITE FOR RESIDUE GOL A 173
8AC8SOFTWARELYS A:82 , THR A:87 , ASP A:161 , HOH A:293BINDING SITE FOR RESIDUE GOL A 174
9AC9SOFTWAREARG A:83 , LYS A:103 , GLY A:105 , HIS A:122 , PRO A:124 , HOH A:290 , HOH A:301BINDING SITE FOR RESIDUE GOL A 175

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CJE)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:36 -Pro A:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with Q28QQ5_JANSC | Q28QQ5 from UniProtKB/TrEMBL  Length:166

    Alignment length:156
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      
         Q28QQ5_JANSC    11 RAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPPPLALFIAGLTGCVMTQIRAFAKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVGDTFIDA 166
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3cjeA00 A:11-166  [code=3.30.300.20, no       name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee...eeeeeeeeee...eeeeeee....------...hhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeeeeeee..eeeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.......eeee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cje A  11 RAEVVFTCNGKAVGKmRNELDVAmVKPFEERFALATDEGA------SAPPPLALFIAGLTGCVmTQIRAFAKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVGDTFIDA 166
                                    20     |  30   |    40        50      | 60        70   |    80        90       100       110       120       130       140       150       160      
                                          26-MSE  34-MSE          50     57               74-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CJE)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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