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(-) Description

Title :  CRYSTAL STRUCTURE OF E.COLI MNMG (GIDA), A HIGHLY-CONSERVED TRNA MODIFYING ENZYME
 
Authors :  R. Shi, A. Matte, M. Cygler, Montreal-Kingston Bacterial Structura Genomics Initiative (Bsgi)
Date :  29 Feb 08  (Deposition) - 03 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Trna Modification, Fad Binding Domain, Structural Genomics, Montreal- Kingston Bacterial Structural Genomics Initiative, Bsgi, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Shi, M. Villarroya, R. Ruiz-Partida, Y. Li, A. Proteau, S. Prado, I. Moukadiri, A. Benitez-Paez, R. Lomas, J. Wagner, A. Matte, A. Velazquez-Campoy, M. E. Armengod, M. Cygler
Structure-Function Analysis Of Escherichia Coli Mnmg (Gida) A Highly Conserved Trna-Modifying Enzyme.
J. Bacteriol. V. 191 7614 2009
PubMed-ID: 19801413  |  Reference-DOI: 10.1128/JB.00650-09

(-) Compounds

Molecule 1 - TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICATION ENZYME GIDA
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GIDA
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: K-12
    Synonym: GLUCOSE-INHIBITED DIVISION PROTEIN A;
MNMG;
GIDA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3CES)

(-) Sites  (0, 0)

(no "Site" information available for 3CES)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CES)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Asn A:222 -Pro A:223
2Ala A:530 -Pro A:531
3Asn B:222 -Pro B:223
4Phe B:347 -Phe B:348
5Glu C:113 -Asn C:114
6Asn C:222 -Pro C:223
7Phe C:347 -Phe C:348
8Ala C:530 -Pro C:531
9Asn D:222 -Pro D:223
10Phe D:347 -Phe D:348

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CES)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GIDA_1PS01280 Glucose inhibited division protein A family signature 1.MNMG_ECOLI273-287
 
 
 		  4A:278-287
B:279-287
C:278-287
D:279-286
2GIDA_2PS01281 Glucose inhibited division protein A family signature 2.MNMG_ECOLI368-391
 
 
 		  4A:368-391
B:368-391
C:368-391
D:368-391
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GIDA_1PS01280 Glucose inhibited division protein A family signature 1.MNMG_ECOLI273-287
 
 
 		  2A:278-287
B:279-287
-
-
2GIDA_2PS01281 Glucose inhibited division protein A family signature 2.MNMG_ECOLI368-391
 
 
 		  2A:368-391
B:368-391
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GIDA_1PS01280 Glucose inhibited division protein A family signature 1.MNMG_ECOLI273-287
 
 
 		  2-
-
C:278-287
D:279-286
2GIDA_2PS01281 Glucose inhibited division protein A family signature 2.MNMG_ECOLI368-391
 
 
 		  2-
-
C:368-391
D:368-391

(-) Exons   (0, 0)

(no "Exon" information available for 3CES)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:531
 aligned with MNMG_ECOLI | P0A6U3 from UniProtKB/Swiss-Prot  Length:629

    Alignment length:559
                                     1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541         
           MNMG_ECOLI     - ---------MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...........eeeeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhh..hhhhhhhhheeeeeee....hhhhheeeeeehhhhhhhhhhhhhhh...eeeee..eeeeee....eeeeee....eeeeeeeee........eee..-------------.hhhhhhhhh....eeee..ee..eee.hhhhhhhheee.............hhhhh.....eeeee.hhhhhhhhhhhhhhh---------------.hhhhhhhhh......eeeeee......eeeee......hhhhhhhhhhh........eee..eeeeeeee.hhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.ee.....hhhhhhh.........eehhhhhh....hhhhhh..........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: A:368-391  --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ces A  -8 SGLVPRGSHMFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIG-------------SIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRS---------------PSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    |    -       181       191       201       211       221       231       241       251       261|        -      |281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541         
                                                                                                                                                                                                        166           180                                                                               262             278                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:519
 aligned with MNMG_ECOLI | P0A6U3 from UniProtKB/Swiss-Prot  Length:629

    Alignment length:551
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 
           MNMG_ECOLI     - -MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhh..hhhhhhhhheeeeeee.........eeeeeehhhhhhhhhhhhhhh...eeeee..eeeeee....eeeeee...eeee..eeee..hhhhh.eee..-------------.hhhhhhhhhh...eeeeeeee..eee.hhhhhhhheee.............hhhhh.....eeeee.hhhhhhhhhhh.-------------------.hhhhhh........eeeeee......eeeee......hhhhhhhhhhh........eee..eeeeeeee.hhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....ee.....hhhhhhhhh.......ee..........hhhhhh.hhhhh....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: B:368-391  --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ces B   0 HMFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIG-------------SIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNL-------------------SIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159      |  -         -|      189       199       209       219       229       239       249       259         -       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 
                                                                                                                                                                                                166           180                                                                            259                 279                                                                                                                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:516
 aligned with MNMG_ECOLI | P0A6U3 from UniProtKB/Swiss-Prot  Length:629

    Alignment length:550
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550
           MNMG_ECOLI     1 MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhh..hhhhhhhhheeeeeee....hhhhheeeeeehhhhhhhhhhhhhh....eeeee..eeeeee....eeeeee....eeeeeeeee........eee..-------------.hhhhhhhhh....eeeeeeee..eee.hhhhhhhheeee............hhhhh.....eeeee.hhhhhhhhhhhhhhh---------------.hhhhhhhh.......eeeeee......eeeee......hhhhhhhhhhh........eee..eeeeeeee.hhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.......--.....-.......---..hhhhhh...hhhhhh..........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: C:368-391  --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ces C   1 MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIG-------------SIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRS---------------PSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSA--AAEVN-HLTAPLS---SGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -       180       190       200       210       220       230       240       250       260 |       -       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480        |- |   | 500   |   510       520       530       540       550
                                                                                                                                                                                               166           180                                                                               262             278                                                                                                                                                                                                                489  | 496 |   504 508                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     492   498                                                    


Chain D from PDB  Type:PROTEIN  Length:507
 aligned with MNMG_ECOLI | P0A6U3 from UniProtKB/Swiss-Prot  Length:629

    Alignment length:551
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 
           MNMG_ECOLI     - -MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhh..hhhhhhhhheeeeeee....hhhhheeeeeehhhhhhhhhhhhhhh...eeeee..eeeeee....eeeeee...eeeeeeeeee..hhhhh...----------------.hhhhhhhhhh...eeee..ee..eee.hhhhhhhheee.............hhhhh.....eeeee.hhhhhhhhh...-------------------hhhhhhh.----...eeeeee......eeeee......hhhhhhhhhhh........eee..ee..eeee.hhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh......--..................---hhhhhhhh...................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: D:368-391  --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ces D   0 HMFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKI----------------SIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNL-------------------SIEDKVMR----NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTW--PSAEAAAEVNAHLTAPLS---SGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEG 550
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159   |     -         -|      189       199       209       219       229       239       249       259         -       279      |  - |     299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479    |  489       499    |  509       519       529       539       549 
                                                                                                                                                                                             163              180                                                                            259                 279    286  291                                                                                                                                                                                              484  |              504 508                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 487
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CES)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CES)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CES)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (MNMG_ECOLI | P0A6U3)
molecular function
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0030488    tRNA methylation    The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
    GO:0002098    tRNA wobble uridine modification    The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  Ligands, Modified Residues, Ions
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  Sites
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  Cis Peptide Bonds
    Ala A:530 - Pro A:531   [ RasMol ]  
    Ala C:530 - Pro C:531   [ RasMol ]  
    Asn A:222 - Pro A:223   [ RasMol ]  
    Asn B:222 - Pro B:223   [ RasMol ]  
    Asn C:222 - Pro C:223   [ RasMol ]  
    Asn D:222 - Pro D:223   [ RasMol ]  
    Glu C:113 - Asn C:114   [ RasMol ]  
    Phe B:347 - Phe B:348   [ RasMol ]  
    Phe C:347 - Phe C:348   [ RasMol ]  
    Phe D:347 - Phe D:348   [ RasMol ]  
 
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  3ces
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  MNMG_ECOLI | P0A6U3
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        MNMG_ECOLI | P0A6U3: 3cp2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3CES)