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(-) Description

Title :  CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL REGULATOR FROM BORDETELLA PARAPERTUSSIS 12822
 
Authors :  K. Tan, H. Li, S. Clancy, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)
Date :  26 Feb 08  (Deposition) - 18 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Apc88698, Tetr, Bordetella Parapertussis 12822, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Dna-Binding, Transcription, Transcription Regulation, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Tan, H. Li, S. Clancy, A. Joachimiak
The Crystal Structure Of A Tetr-Family Transcriptional Regulator From Bordetella Parapertussis 12822.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE TETR-FAMILY TRANSCRIPTIONAL REGULATOR
    AtccBAA-587
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPMCSG7
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneBPP2833
    Organism ScientificBORDETELLA PARAPERTUSSIS 12822
    Organism Taxid257311
    Strain12822 / NCTC 13253

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:192
 aligned with Q7W6R8_BORPA | Q7W6R8 from UniProtKB/TrEMBL  Length:200

    Alignment length:192
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198  
         Q7W6R8_BORPA     9 YENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFLQIVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLFFGMINWTYTWYKADGSVSPDALAERTVQLFLDGYLNLLSA 200
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3ccyA01 A:9-53 Homeodomain-like              3ccyA02 A:54-200 Tetracycline Repressor, domain 2                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ccy A   9 YENIRDTIIERAAAmFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDmLTTHVDSLLERCRQVLYGSNEPKTRFLQIVKLFLEIYATSRDRHVVmLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDmAANRTLAHVDTmLFFGmINWTYTWYKADGSVSPDALAERTVQLFLDGYLNLLSA 200
                                    18    |   28        38        48        58   |    68        78        88        98       108|      118       128       138       148       158    |  168       178       188       198  
                                         23-MSE                                 62-MSE                                        109-MSE                              146-MSE     158-MSE|                                     
                                                                                                                                                                                    163-MSE                                 

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 Classification and Annotation

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(-) CATH Domains  (2, 2)

Asymmetric Unit

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(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q7W6R8_BORPA | Q7W6R8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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