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Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED UPF0201 PROTEIN AF_135
 
Authors :  R. Sugadev, S. Ozyurt, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  15 Feb 08  (Deposition) - 13 May 08  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Uncharacterized Upf0201 Protein Af_135, Structural Genomics, Psi-Ii, Dimer, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Atp- Binding, Nucleotide-Binding, Nucleotide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Sugadev, S. Ozyurt, S. K. Burley, S. Swaminathan
Crystal Structure Of Uncharacterized Upf0201 Protein Af_135.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPF0200/UPF0201 PROTEIN AF_1395
    Atcc49558
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPSGX3(BC)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentRESIDUES 183-323
    GeneAF_1395
    Organism ScientificARCHAEOGLOBUS FULGIDUS DSM 4304
    Organism Taxid224325
    StrainDSM 4304 / VC-16 / JCM 9628 / NBRC 100126

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3C9G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3C9G)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Y1395_ARCFU | O28876 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:131
                                   196       206       216       226       236       246       256       266       276       286       296       306       316 
          Y1395_ARCFU   187 KNVEIEIRTKIHPTESEDKVLKAIRNIFPDAEIEISEEGEVYGRAYSLDRFRELLRKQRILDTARSEILKGRNGKEVTIYLNKQTATVSRINFCDENAVLSPIKVTFRLNNIPFSRFLDYIAPETKDGRPV 317
               SCOP domains d3c9ga_ A: automated matches                                                                                                        SCOP domains
               CATH domains 3c9gA01 A:187-313  [code=3.30.1440.10, no name defined]                                                                        ---- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....hhhhhhhhhhhhh...eeee....eeeeee..hhhhhhhhhhh..hhhhhhhhhhh....eeeeeehhhhhh............-..eeeeeee...hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c9g A 187 KNVEIEIRTKIHPTESEDKVLKAIRNIFPDAEIEISEEGEVYGRAYSLDRFRELLRKQRILDTARSEILKGRNGKEVTIYLNKQTATVSRINFCDENAV-SPIKVTFRLNNIPFSRFLDYIAPETKDGRPV 317
                                   196       206       216       226       236       246       256       266       276        |-|      296       306       316 
                                                                                                                            285 |                              
                                                                                                                              287                              

Chain B from PDB  Type:PROTEIN  Length:128
 aligned with Y1395_ARCFU | O28876 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:129
                                   198       208       218       228       238       248       258       268       278       288       298       308         
          Y1395_ARCFU   189 VEIEIRTKIHPTESEDKVLKAIRNIFPDAEIEISEEGEVYGRAYSLDRFRELLRKQRILDTARSEILKGRNGKEVTIYLNKQTATVSRINFCDENAVLSPIKVTFRLNNIPFSRFLDYIAPETKDGRPV 317
               SCOP domains d3c9gb_ B: automated matches                                                                                                      SCOP domains
               CATH domains 3c9gB01 B:189-313  [code=3.30.1440.10, no name defined]                                                                      ---- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhh...eeee....eeeeee..hhhhhhhhhhh.hhhhhhhhhhhhee..eeeeee..hhhhhh..........-..eeeeee....hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c9g B 189 VEIEIRTKIHPTESEDKVLKAIRNIFPDAEIEISEEGEVYGRAYSLDRFRELLRKQRILDTARSEILKGRNGKEVTIYLNKQTATVSRINFCDENAV-SPIKVTFRLNNIPFSRFLDYIAPETKDGRPV 317
                                   198       208       218       228       238       248       258       268       278      |288       298       308         
                                                                                                                          285 |                              
                                                                                                                            287                              

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3C9G)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Y1395_ARCFU | O28876)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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