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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN STRUCTURALLY SIMILAR TO SM/LSM-LIKE RNA-BINDING PROTEINS (JCVI_PEP_1096686650277) FROM UNCULTURED MARINE ORGANISM AT 2.60 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Jan 08  (Deposition) - 29 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Metagenomics, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Das, P. Kozbial, H. L. Axelrod, M. D. Miller, D. Mcmullan, S. S. Krishna, P. Abdubek, C. Acosta, T. Astakhova, P. Burra, D. Carlton, C. Chen, H. J. Chiu, T. Clayton, M. C. Deller, L. Duan, Y. Elias, M. A. Elsliger, D. Ernst, C. Farr, J. Feuerhelm, A. Grzechnik S. K. Grzechnik, J. Hale, G. W. Han, L. Jaroszewski, K. K. Jin, H. A. Johnson, H. E. Klock, M. W. Knuth, A. Kumar, D. Marciano, A. T. Morse, K. D. Murphy, E. Nigoghossian, A. Nopakun, L. Okach, S. Oommachen, J. Paulsen, C. Puckett, R. Reyes, C. L. Rife, N. Sefcovic S. Sudek, H. Tien, C. Trame, C. V. Trout, H. Van Den Bedem, D. Weekes, A. White, Q. Xu, K. O. Hodgson, J. Wooley, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Crystal Structure Of A Novel Sm-Like Protein Of Putative Cyanophage Origin At 2. 60 A Resolution.
Proteins V. 75 296 2009
PubMed-ID: 19173316  |  Reference-DOI: 10.1002/PROT.22360

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: UNCULTURED MARINE ORGANISM
    Organism Taxid: 360281

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3BY7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BY7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BY7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BY7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BY7)

(-) Exons   (0, 0)

(no "Exon" information available for 3BY7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:80
                                                                                                               
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains 3by7A00 A:2-86  [code=2.30.30.100, no name defined]                              CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeeeee..eeeeeeeeeeeee...eeeeee........eeeee...eeeee..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3by7 A  2 KNIKImRLVTGEDIIGNISESQGLITIKKAFVIIPmQPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDDIIKSYESHT 86
                                 |  11        21        31     |||46        56        66        76        86
                                 7-MSE                        37-MSE                                        
                                                               38|                                          
                                                                44                                          


Chain B from PDB  Type:PROTEIN  Length:81
                                                                                                                
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains 3by7B00 B:2-87  [code=2.30.30.100, no name defined]                               CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeeeee..eeeeeeeeeeee.....eeeee........eeeee...eeeee..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  3by7 B  2 KNIKImRLVTGEDIIGNISESQGLITIKKAFVIIPmQPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDDIIKSYESHTS 87
                                 |  11        21        31     |||46        56        66        76        86 
                                 7-MSE                        37-MSE                                         
                                                               38|                                           
                                                                44                                           


Chain C from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains 3by7C00 C:2-87  [code=2.30.30.100, no name defined]                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeeeee..eeeeeeeeeeeee....eeeeee........eeeee...eeeee..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  3by7 C  2 KNIKImRLVTGEDIIGNISESQGLITIKKAFVIIPmQAPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDDIIKSYESHTS 87
                                 |  11        21        31     | |45        55        65        75        85  
                                 7-MSE                        37-MSE                                          
                                                                39|                                           
                                                                 44                                           


Chain D from PDB  Type:PROTEIN  Length:86
                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3by7D00 D:2-90  [code=2.30.30.100, no name defined]                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeeeee..eeeeeeeeeeeee.....eeeeee........eeeee...eeeee..hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  3by7 D  2 KNIKImRLVTGEDIIGNISESQGLITIKKAFVIIPmQGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDDIIKSYESHTSEII 90
                                 |  11        21        31     |||44        54        64        74        84      
                                 7-MSE                        37-MSE                                              
                                                               38|                                                
                                                                42                                                


Chain E from PDB  Type:PROTEIN  Length:76
                                                                                                           
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains 3by7E00 E:3-85  [code=2.30.30.100, no name defined]                          CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeeeee..eeeeeeeeeeee...eeeee........eeeee...eeeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3by7 E  3 NIKImRLVTGEDIIGNISESQGLITIKKAFVIIPmVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDDIIKSYESH 85
                                |   12        22        32    ||  49        59        69        79      
                                7-MSE                        37-MSE                                     
                                                              45
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BY7)

(-) CATH Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BY7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3BY7)

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