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(-) Description

Title :  CRYSTAL STRUCTURE OF A NTF-2 LIKE PROTEIN OF UNKNOWN FUNCTION (SO_0125) FROM SHEWANELLA ONEIDENSIS MR-1 AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Oct 07  (Deposition) - 13 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Ntf-2 Like Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Ntf-2 Like Protein Of Unknown Function (Np_715767. 1) From Shewanella Oneidensis At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System StrainHK100
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneNP_715767.1, SO_0125
    Organism ScientificSHEWANELLA ONEIDENSIS
    Organism Taxid211586
    StrainMR-1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:78 , ASN A:79 , HOH A:212BINDING SITE FOR RESIDUE CL A 122
2AC2SOFTWAREVAL A:7 , LYS A:11 , GLU A:14 , LYS A:68 , PHE A:69 , HOH A:165 , HOH A:239 , HOH A:255BINDING SITE FOR RESIDUE EDO A 123
3AC3SOFTWAREGLY A:20 , TYR A:58 , HOH A:234BINDING SITE FOR RESIDUE EDO A 124
4AC4SOFTWAREPRO A:59 , ASP A:60 , SER A:63 , MSE A:76 , SER A:78 , ASN A:79 , HOH A:157 , HOH A:212BINDING SITE FOR RESIDUE EDO A 125
5AC5SOFTWAREGLU A:66 , ASP A:89 , LYS A:91 , HOH A:219BINDING SITE FOR RESIDUE EDO A 126
6AC6SOFTWARETRP A:88 , PRO A:97 , THR A:98 , ASP A:110 , ASP A:121 , HOH A:194 , HOH A:223BINDING SITE FOR RESIDUE EDO A 127
7AC7SOFTWAREGLN A:13 , TYR A:25 , TYR A:29 , PHE A:69 , ILE A:114 , ASP A:117 , HOH A:175BINDING SITE FOR RESIDUE EDO A 128

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3B7C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3B7C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3B7C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3B7C)

(-) Exons   (0, 0)

(no "Exon" information available for 3B7C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with Q8EKG8_SHEON | Q8EKG8 from UniProtKB/TrEMBL  Length:149

    Alignment length:121
                                    38        48        58        68        78        88        98       108       118       128       138       148 
         Q8EKG8_SHEON    29 VPTDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYAAMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDHSSD 149
               SCOP domains d3b7ca1 A:1-121 Uncharacterized protein SO0125                                                                            SCOP domains
               CATH domains -3b7cA00 A:2-121  [code=3.10.450.50, no name defined]                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhh........eee....eeehhhhhhhhhhhhh.hhhhh.eeeeeeeeeeeee..eeeeeeeeeee......eeeeeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b7c A   1 mPTDDIVQLLKGQEEAWNRGDLDAYmQGYWQNEQLmLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKmLSNYAAmVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITmDHSSD 121
                            |       10        20     |  30     |  40        50        60        70     |  80  |     90       100       110     | 120 
                            |                       26-MSE    36-MSE                                  76-MSE 83-MSE                          116-MSE 
                            1-MSE                                                                                                                    

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B7C)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q8EKG8_SHEON | Q8EKG8)
molecular function
    GO:0004067    asparaginase activity    Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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