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(-) Description

Title :  THE 0.88 ANGSTROM X-RAY STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN COMPLEXED WITH STEARIC ACID
 
Authors :  S. Sugiyama, S. Matsuoka, E. Mizohata, D. Matsuoka, H. Ishida, M. Hiros K. Kakinouchi, T. Hara, H. Matsumura, S. Murakami, T. Inoue, M. Murata
Date :  25 May 14  (Deposition) - 28 Jan 15  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.88
Chains :  Asym./Biol. Unit :  A
Keywords :  Antiparallel Beta Barrel, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Matsuoka, S. Sugiyama, D. Matsuoka, M. Hirose, S. Lethu, H. Ano, T. Hara, O. Ichihara, S. R. Kimura, S. Murakami, H. Ishida, E. Mizohata T. Inoue, M. Murata
Water-Mediated Recognition Of Simple Alkyl Chains By Heart-Type Fatty-Acid-Binding Protein
Angew. Chem. Int. Ed. Engl. 2014
PubMed-ID: 25491543  |  Reference-DOI: 10.1002/ANIE.201409830

(-) Compounds

Molecule 1 - FATTY ACID-BINDING PROTEIN, HEART
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET21A
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneFABP3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFATTY ACID-BINDING PROTEIN 3, HEART-TYPE FATTY ACID-BINDING PROTEIN, H-FABP, MAMMARY-DERIVED GROWTH INHIBITOR, MDGI, MUSCLE FATTY ACID-BINDING PROTEIN, M-FABP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1P6G2Ligand/IonHEXAETHYLENE GLYCOL
2STE1Ligand/IonSTEARIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:53 , LYS A:58 , LEU A:115 , ARG A:126 , TYR A:128 , HOH A:1083 , HOH A:1094BINDING SITE FOR RESIDUE STE A 200
2AC2SOFTWAREVAL A:11 , SER A:34 , MET A:35 , LYS A:37 , PHE A:70 , ASP A:71 , GLY A:120 , THR A:121 , HOH A:1026 , HOH A:1101 , HOH A:1102 , HOH A:1106BINDING SITE FOR RESIDUE P6G A 201
3AC3SOFTWAREGLN A:31 , MET A:35 , ASP A:47 , LYS A:65 , GLY A:111 , HOH A:1153BINDING SITE FOR RESIDUE P6G A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WVM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WVM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WVM)

(-) Exons   (0, 0)

(no "Exon" information available for 3WVM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeeeeeeeehhhhhhhhh..hhhhhhhhh....eeeeeee..eeeeeee.....eeeeee....eeee.....eeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wvm A   0 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKEA 132
                                     9        19        29        39        49        59        69        79        89        99       109       119       129   

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WVM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WVM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WVM)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABPH_HUMAN | P054131g5w 1hmr 1hms 1hmt 2hmb 3rsw 3wbg 3wxq 4tjz 4tkb 4tkh 4tkj 4wbk 5b27 5b28 5b29 5ce4 5hz9

(-) Related Entries Specified in the PDB File

3wbg THE SAME PROTEIN COMPLEXED WITH 1-ANILINONAPHTALENE-8- SULPHONIC ACID