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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ACETYLCHOLINE BINDING PROTEIN (ACHBP) FROM LYMNAEA STAGNALIS IN COMPLEX WITH NS3531 (1-(PYRIDIN-3-YL)-1,4-DIAZEPANE)
 
Authors :  L. A. H. Rohde, P. K. Ahring, M. L. Jensen, E. O. Nielsen, D. Peters, C. Hel C. Krintel, K. Harpsoe, M. Gajhede, J. S. Kastrup, T. Balle
Date :  17 Oct 11  (Deposition) - 14 Dec 11  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Lymnaea Stagnalis, Agonist, Ligand-Bindig Domain, Acetylcholine, Acetylcholine-Binding Protein, Acetylcholine-Binding Protein-Agonist Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. A. Rohde, P. K. Ahring, M. L. Jensen, E. Nielsen, D. Peters, C. Helgstrand, C. Krintel, K. Harpse, M. Gajhede, J. S. Kastrup, T. Balle
Intersubunit Bridge Formation Governs Agonist Efficacy At Nicotinic Acetylcholine Alpha 4 Beta 2 Receptors: Unique Role Of Halogen Bonding Revealed.
J. Biol. Chem. V. 287 4248 2012
PubMed-ID: 22170047  |  Reference-DOI: 10.1074/JBC.M111.292243

(-) Compounds

Molecule 1 - ACETYLCHOLINE-BINDING PROTEIN
    Chains: B, A, C, D, E, F, G, J, I, H
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: PFASTBAC I
    Organism Common: GREAT POND SNAIL
    Organism Scientific: LYMNAEA STAGNALIS
    Organism Taxid: 6523
    Synonym: ACH-BINDING PROTEIN, ACHBP

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
109O10Ligand/Ion1-(PYRIDIN-3-YL)-1,4-DIAZEPANE
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO46Ligand/IonSULFATE ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
109O5Ligand/Ion1-(PYRIDIN-3-YL)-1,4-DIAZEPANE
2NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO44Ligand/IonSULFATE ION
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
109O5Ligand/Ion1-(PYRIDIN-3-YL)-1,4-DIAZEPANE
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR B:89 , TRP B:143 , THR B:144 , TYR B:185 , HOH B:232 , LEU C:112 , MET C:114BINDING SITE FOR RESIDUE 09O B 211
02AC2SOFTWAREARG A:148 , ARG B:3 , PRO B:71 , ASP B:72BINDING SITE FOR RESIDUE SO4 B 212
03AC3SOFTWARETYR A:89 , TRP A:143 , TYR A:185 , TYR A:192 , MET B:114 , HOH B:218BINDING SITE FOR RESIDUE 09O A 211
04AC4SOFTWAREPHE A:165 , SER A:166 , GLN A:167 , ARG E:137BINDING SITE FOR RESIDUE SO4 A 212
05AC5SOFTWAREARG A:3 , PRO A:71 , ASP A:72 , HOH A:240 , ARG E:148BINDING SITE FOR RESIDUE SO4 A 213
06AC6SOFTWARETYR C:89 , SER C:142 , TRP C:143 , THR C:144 , TYR C:185 , TYR C:192 , HOH C:213 , LEU D:112 , MET D:114BINDING SITE FOR RESIDUE 09O C 211
07AC7SOFTWARETYR D:89 , TRP D:143 , TYR D:185 , CYS D:187 , TYR D:192 , HOH D:215 , LEU E:112 , MET E:114BINDING SITE FOR RESIDUE 09O D 211
08AC8SOFTWAREARG D:148 , ARG E:3 , PRO E:71 , ASP E:72 , GLN E:73BINDING SITE FOR RESIDUE SO4 E 212
09AC9SOFTWAREMET A:114 , HOH A:227 , TYR E:89 , TRP E:143 , TYR E:185 , CYS E:187 , TYR E:192BINDING SITE FOR RESIDUE 09O E 211
10BC1SOFTWARETYR F:89 , TRP F:143 , TYR F:185 , TYR F:192 , LEU J:112 , MET J:114 , HOH J:730BINDING SITE FOR RESIDUE 09O F 211
11BC2SOFTWAREMET F:114 , HOH F:218 , TYR G:89 , TRP G:143 , CYS G:187 , TYR G:192BINDING SITE FOR RESIDUE 09O G 211
12BC3SOFTWAREARG G:3 , PRO G:71 , ASP G:72 , ARG H:148BINDING SITE FOR RESIDUE SO4 G 212
13BC4SOFTWAREGLN E:22 , ARG E:61 , HOH E:221 , ASN G:66 , HIS I:69BINDING SITE FOR RESIDUE NAG G 213
14BC5SOFTWARELEU I:112 , MET I:114 , HOH I:362 , TYR J:89 , TRP J:143 , TYR J:192BINDING SITE FOR RESIDUE 09O J 211
15BC6SOFTWARETRP H:53 , MET H:114 , TYR I:89 , TRP I:143 , HOH I:217BINDING SITE FOR RESIDUE 09O I 211
16BC7SOFTWARELEU G:112 , MET G:114 , TYR H:89 , TRP H:143 , TYR H:185 , TYR H:192 , HOH H:217BINDING SITE FOR RESIDUE 09O H 211
17BC8SOFTWARETYR G:164 , TYR H:89 , LYS H:139 , TYR H:185BINDING SITE FOR RESIDUE SO4 H 212

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:123 -A:136
2A:187 -A:188
3B:123 -B:136
4B:187 -B:188
5C:123 -C:136
6C:187 -C:188
7D:123 -D:136
8D:187 -D:188
9E:123 -E:136
10E:187 -E:188
11F:123 -F:136
12F:187 -F:188
13G:123 -G:136
14G:187 -G:188
15H:123 -H:136
16H:187 -H:188
17I:123 -I:136
18I:187 -I:188
19J:123 -J:136
20J:187 -J:188

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3U8J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U8J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U8J)

(-) Exons   (0, 0)

(no "Exon" information available for 3U8J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:206
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219      
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGR 225
               SCOP domains d3u8ja_ A: automated matches                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee................eeeeeeeeeeeeee......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u8j A   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGR 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      


Chain B from PDB  Type:PROTEIN  Length:210
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:210
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 229
               SCOP domains d3u8jb_ B: automated matches                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee................eeeeeeeeeeeeee......eeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u8j B   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 210
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210


Chain C from PDB  Type:PROTEIN  Length:204
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 223
               SCOP domains d3u8jc_ C: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee.................eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u8j C   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain D from PDB  Type:PROTEIN  Length:204
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 223
               SCOP domains d3u8jd_ D: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.....hhhhh......eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u8j D   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain E from PDB  Type:PROTEIN  Length:198
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 223
               SCOP domains d3u8je_ E: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.------.........eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u8j E   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPT------SEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    |    - |     170       180       190       200    
                                                                                                                                                                                    155    162                                          


Chain F from PDB  Type:PROTEIN  Length:198
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 223
               SCOP domains d3u8jf_ F: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.------.........eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u8j F   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPT------SEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    |    - |     170       180       190       200    
                                                                                                                                                                                    155    162                                          


Chain G from PDB  Type:PROTEIN  Length:203
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:205
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219     
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG 224
               SCOP domains d3u8jg_ G: automated m  atches                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh........--..eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee................eeeeeeeeeeeeee......eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u8j G   1 LDRADILYNIRQTSRPDVIPTQ--RPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG 205
                                    10        20 |  |   30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200     
                                                22 25                                                                                                                                                                                    


Chain H from PDB  Type:PROTEIN  Length:200
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 223
               SCOP domains d3u8jh_ H: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.----.hhhhh.....eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u8j H   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPT----DDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    |  160       170       180       190       200    
                                                                                                                                                                                    155  160                                            


Chain I from PDB  Type:PROTEIN  Length:200
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:205
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219     
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG 224
               SCOP domains d3u8ji_ I: automated matches                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.-----..........eeeeeeeeeeeeee......eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u8j I   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPT-----DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG 205
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    |    -|      170       180       190       200     
                                                                                                                                                                                    155   161                                            


Chain J from PDB  Type:PROTEIN  Length:199
 aligned with ACHP_LYMST | P58154 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           ACHP_LYMST    20 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 223
               SCOP domains d3u8jj_ J: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.-----..........eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u8j J   1 LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPT-----DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    |    -|      170       180       190       200    
                                                                                                                                                                                    155   161
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 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U8J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U8J)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (ACHP_LYMST | P58154)
molecular function
    GO:0005230    extracellular ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts.
biological process
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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  3u8j
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  ACHP_LYMST | P58154
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACHP_LYMST | P58154: 1i9b 1uv6 1uw6 1ux2 1yi5 2zju 2zjv 3u8k 3u8l 3u8m 3u8n 3wip 3wth 3wti 3wtj 3wtk 3wtl 3wtm 3wtn 3wto 3zdg 3zdh 4alx 4hqp 4nzb 4qaa 4qab 4qac 4um1 4um3 4zjt 4zk1 4zr6 4zru 5afh 5afj 5afk 5afl 5afm 5afn 5bp0 5j5f 5j5g 5j5h 5j5i 5t90

(-) Related Entries Specified in the PDB File

1uv6 X-RAY STRUCTURE OF ACETYLCHOLINE BINDING PROTEIN (ACHBP) IN COMPLEX WITH CARBAMYLCHOLINE
1uw6 X-RAY STRUCTURE OF ACETYLCHOLINE BINDING PROTEIN (ACHBP) IN COMPLEX WITH NICOTINE
3u8k CRYSTAL STRUCTURE OF THE ACETYLCHOLINE BINDING PROTEIN (ACHBP) FROM LYMNAEA STAGNALIS IN COMPLEX WITH NS3573 (1- (5-ETHOXYPYRIDIN-3-YL)-1,4-DIAZEPANE)
3u8l CRYSTAL STRUCTURE OF THE ACETYLCHOLINE BINDING PROTEIN (ACHBP) FROM LYMNAEA STAGNALIS IN COMPLEX WITH NS3570 (1- (5-PHENYLPYRIDIN-3-YL)-1,4-DIAZEPANE)
3u8m CRYSTAL STRUCTURE OF THE ACETYLCHOLINE BINDING PROTEIN (ACHBP) FROM LYMNAEA STAGNALIS IN COMPLEX WITH NS3920 (1- (6-BROMOPYRIDIN-3-YL)-1,4-DIAZEPANE)
3u8n CRYSTAL STRUCTURE OF THE ACETYLCHOLINE BINDING PROTEIN (ACHBP) FROM LYMNAEA STAGNALIS IN COMPLEX WITH NS3950 (1- (6-BROMO-5-ETHOXYPYRIDIN-3-YL)-1,4-DIAZEPANE)