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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF DUF2500 (PF10694) FROM KLEBSIELLA PNEUMONIAE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET KPR96
 
Authors :  J. Seetharaman, M. Su, D. Wang, C. Ciccosanti, S. Sahdev, R. Nair, B. Ros T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong Northeast Structural Genomics Consortium (Nesg)
Date :  31 Dec 10  (Deposition) - 10 Aug 11  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H (1x),N (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Biol. Unit 12:  L  (1x)
Biol. Unit 13:  M  (1x)
Biol. Unit 14:  O  (1x)
Biol. Unit 15:  P  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Kpk_0280 Protein, Structure Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, M. Su, D. Wang, C. Ciccosanti, S. Sahdev, R. Nair, B. Rost, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt L. Tong, Northeast Structural Genomics Consortium (Nesg)
X-Ray Crystal Structure Of Duf2500 (Pf10694) From Klebsiell Pneumoniae, Northeast Structural Genomics Consortium Target Kpr96
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE RECEPTOR YHHM
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    Engineered: YES
    Gene: KVAR_0268
    Organism Scientific: KLEBSIELLA VARIICOLA AT-22
    Organism Taxid: 640131
    Strain: AT-22

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): A               
Biological Unit 2 (1x):  B              
Biological Unit 3 (1x):   C             
Biological Unit 4 (1x):    D            
Biological Unit 5 (1x):     E           
Biological Unit 6 (1x):      F          
Biological Unit 7 (1x):       G         
Biological Unit 8 (1x):        H (1x)     N (1x)  
Biological Unit 9 (1x):         I       
Biological Unit 10 (1x):          J      
Biological Unit 11 (1x):           K     
Biological Unit 12 (1x):            L    
Biological Unit 13 (1x):             M   
Biological Unit 14 (1x):               O 
Biological Unit 15 (1x):                P

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric Unit (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 9 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 10 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 11 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 12 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 13 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 14 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 15 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3Q6C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3Q6C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3Q6C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q6C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q6C)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q6C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee...eeeeeeeee....eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 3q6c A  38 LLQKRVIVSNKREKVINEmRYEASFRPEGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47      ||71       |83        93       103|      113      
                                           54||       79|                   104-MSE           
                                            69|        82                                     
                                             70-MSE                                           


Chain B from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c B  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain C from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c C  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain D from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c D  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain E from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee...eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 3q6c E  38 LLQKRVIVSNKREKVIEmRYEASFRPELEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72      ||85        95       105       115    
                                          53||       79|                  104-MSE           
                                           69|        83                                    
                                            70-MSE                                          


Chain F from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c F  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain G from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c G  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain H from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeee.hhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c H  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain I from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee.ee....eeeeeeeee....eeeeehhhhhhhh....eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 3q6c I  38 LLQKRVIVSNKREKVINDRRSEmRYEASFRPENLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDPL 120
                                    47        57|||     77  ||    89        99    |  109       119 
                                               58||        80|                  104-MSE            
                                                69|         83                                     
                                                 70-MSE                                            


Chain J from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeee....eeeeee.....eeeeehhhhhhhh.....eeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 3q6c J  38 LLQKRVIVSNKREKVIEmRYEASFRPGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72     || 85        95       105       115    
                                          53||      78|                   104-MSE           
                                           69|       82                                     
                                            70-MSE                                          


Chain K from PDB  Type:PROTEIN  Length:65
                                                                                                 
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee....eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                 3q6c K  38 LLQKRVIVSNKREKVIEmRYEASFRPEGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72      ||84        94       104       114     
                                          53||       79|                   104-MSE           
                                           69|        82                                     
                                            70-MSE                                           


Chain L from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c L  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain M from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 3q6c M  38 LLQKRVIVSNKREKVIEmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47     |||72        82        92       102 |     112       
                                          53||                               104-MSE           
                                           69|                                                 
                                            70-MSE                                             


Chain N from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee....eeeeeeee....eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 3q6c N  38 LLQKRVIVSNKREKVINDEmRYEASFRPGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47       |70       |83        93       103|      113      
                                            55||      78|                   104-MSE           
                                             69|       82                                     
                                              70-MSE                                          


Chain O from PDB  Type:PROTEIN  Length:70
                                                                                                      
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee.ee..eeeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 3q6c O  38 LLQKRVIVSNKREKVINDREmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47        69|       79        89        99    |  109       119
                                             56||                               104-MSE           
                                              69|                                                 
                                               70-MSE                                             


Chain P from PDB  Type:PROTEIN  Length:65
                                                                                                 
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee..eeeeeeee......eeeeehhhhhhhh....eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                 3q6c P  38 LLQKRVIVSNKREKVmRYEASFRPENGGLEVVFRLDAPQYHALSVGDRGmLSYKGTAFVAFTPDP 119
                                    47    ||  74        84        94       104       114     
                                         52|                               104-MSE           
                                          70-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(no "SCOP Domain" information available for 3Q6C)

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(-) Pfam Domains  (0, 0)

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(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3Q6C)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3Q6C)