3Q5L - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF HSP90 FROM LEISHMANIA MAJOR, LMJF33.0312:M1-K 213 IN THE PRESENCE OF 17-AEP-GELDANAMYCIN

Authors :   A. K. Wernimont, W. Tempel, Y. H. Lin, A. Hutchinson, F. Mackenzie, A. Fa D. Cossar, Y. Zhao, M. Schapira, C. H. Arrowsmith, A. M. Edwards, C. Bou J. Weigelt, M. A. J. Ferguson, R. Hui, J. C. Pizarro, T. Hills, Structur Genomics Consortium (Sgc)

Date :   28 Dec 10 (Deposition) - 23 Feb 11 (Release) - 05 Dec 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x),B (1x)
Biol. Unit 2: C (1x),D (1x)

Keywords :   Sleeping Sickness, Leishmania, Heat Shock Protein, Structural Genomics, Structural Genomics Consortium, Sgc, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Wernimont, W. Tempel, Y. H. Lin, A. Hutchinson, F. Mackenzie, A. Fairlamb, D. Cossar, Y. Zhao, M. Schapira, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, M. A. J. Ferguson, R. Hui, J. C. Pizarro, T. Hills
Crystal Structure Of The Amino-Terminal Domain Of Hsp90 Fro Leishmania Major, Lmjf33. 0312:M1-K 213 In The Presence Of 17-Aep-Geldanamycin.
To Be Published
PubMed: search

Molecule 1 - HEAT SHOCK PROTEIN 83-1
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	LMJF33.0312
	Organism Scientific	:	LEISHMANIA MAJOR
	Organism Taxid	:	5664

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A (1x)	B (1x)
Biological Unit 2 (1x)	:			C (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	KX2	4	Ligand/Ion	(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-13-HYDROXY-8,14-DIMETHOXY-4,10,12,16-TETRAMETHYL-3,20,22-TRIOXO-19-{[2-(PYRROLIDIN-1-YL)ETHYL]AMINO}-2-AZABICYCLO[16.3.1]DOCOSA-1(21),4,6,10,18-PENTAEN-9-YLCARBAMATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	KX2	1	Ligand/Ion	(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-13-HYDROXY-8,14-DIMETHOXY-4,10,12,16-TETRAMETHYL-3,20,22-TRIOXO-19-{[2-(PYRROLIDIN-1-YL)ETHYL]AMINO}-2-AZABICYCLO[16.3.1]DOCOSA-1(21),4,6,10,18-PENTAEN-9-YLCARBAMATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	KX2	1	Ligand/Ion	(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-13-HYDROXY-8,14-DIMETHOXY-4,10,12,16-TETRAMETHYL-3,20,22-TRIOXO-19-{[2-(PYRROLIDIN-1-YL)ETHYL]AMINO}-2-AZABICYCLO[16.3.1]DOCOSA-1(21),4,6,10,18-PENTAEN-9-YLCARBAMATE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:36 , ASP A:39 , ALA A:40 , LYS A:43 , ASP A:78 , ILE A:81 , MET A:83 , ASN A:91 , GLY A:120 , VAL A:121 , GLY A:122 , PHE A:123 , THR A:169 , GLN B:13 , MET B:104	BINDING SITE FOR RESIDUE KX2 A 801
2	AC2	SOFTWARE	ASN B:36 , ASP B:39 , ALA B:40 , LYS B:43 , ASP B:78 , ASP B:87 , ASN B:91 , ARG B:97 , GLY B:120 , VAL B:121 , GLY B:122 , PHE B:123 , THR B:169 , ILE B:171	BINDING SITE FOR RESIDUE KX2 B 801
3	AC3	SOFTWARE	MET A:104 , ASN C:36 , ALA C:37 , ASP C:39 , ALA C:40 , LYS C:43 , ASP C:78 , ILE C:81 , GLY C:120 , VAL C:121 , GLY C:122 , PHE C:123 , THR C:169	BINDING SITE FOR RESIDUE KX2 C 801
4	AC4	SOFTWARE	GLN C:13 , MET C:104 , ASN D:36 , ALA D:37 , ASP D:39 , ALA D:40 , LYS D:43 , ASP D:78 , ILE D:81 , ASN D:91 , ARG D:97 , GLY D:120 , VAL D:121 , GLY D:122 , PHE D:123	BINDING SITE FOR RESIDUE KX2 D 801

(no "SS Bond" information available for 3Q5L)

(no "Cis Peptide Bond" information available for 3Q5L)

(no "SAP(SNP)/Variant" information available for 3Q5L)

(no "PROSITE Motif" information available for 3Q5L)

(no "Exon" information available for 3Q5L)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:209
 aligned with Q4Q4I6_LEIMA | Q4Q4I6 from UniProtKB/TrEMBL  Length:701

    Alignment length:214
                                  1                                                                                                                                                                                                               
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
         Q4Q4I6_LEIMA     - ------MTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
               SCOP domains d3q5la_ A: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeee.....hhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee......eeeee....eeeeee-----...eeeeeeee...hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q5l A  -5 NLYFQGMTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITS-----MKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154    |    -|      174       184       194       204    
                                                                                                                                                                                              159   165

Chain B from PDB  Type:PROTEIN  Length:214
 aligned with Q4Q4I6_LEIMA | Q4Q4I6 from UniProtKB/TrEMBL  Length:701

    Alignment length:214
                                  1                                                                                                                                                                                                               
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
         Q4Q4I6_LEIMA     - ------MTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
               SCOP domains d3q5lb_ B: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeee.....hhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee......eeeee....eeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhhh......eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q5l B  -5 NLYFQGMTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain C from PDB  Type:PROTEIN  Length:216
 aligned with Q4Q4I6_LEIMA | Q4Q4I6 from UniProtKB/TrEMBL  Length:701

    Alignment length:216
                                    1                                                                                                                                                                                                               
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      
         Q4Q4I6_LEIMA     - --------MTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
               SCOP domains d3q5lc_ C: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee....eeeeee.....hhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhh.hhhhhhh.eeeeeeeee......eeeee....eeeeee........eeeeeeee...hhhhhhhhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3q5l C  -7 RENLYFQGMTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Chain D from PDB  Type:PROTEIN  Length:215
 aligned with Q4Q4I6_LEIMA | Q4Q4I6 from UniProtKB/TrEMBL  Length:701

    Alignment length:215
                                   1                                                                                                                                                                                                               
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203     
         Q4Q4I6_LEIMA     - -------MTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
               SCOP domains d3q5ld_ D: automated matches                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------HATPase_c_3-3q5lD01 D:23-198                                                                                                                                                    ---------- Pfam domains (1)
           Pfam domains (2) -----------------------------HATPase_c_3-3q5lD02 D:23-198                                                                                                                                                    ---------- Pfam domains (2)
           Pfam domains (3) -----------------------------HATPase_c_3-3q5lD03 D:23-198                                                                                                                                                    ---------- Pfam domains (3)
           Pfam domains (4) -----------------------------HATPase_c_3-3q5lD04 D:23-198                                                                                                                                                    ---------- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP90-3q5lD05 D:181-208      Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP90-3q5lD06 D:181-208      Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP90-3q5lD07 D:181-208      Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP90-3q5lD08 D:181-208      Pfam domains (8)
         Sec.struct. author .......eeeeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee......eeeeee.....hhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee......eeeee....eeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q5l D  -6 ENLYFQGMTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3Q5L)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: His_Kinase_A (147)

Family: HATPase_c_3 (11)

Leishmania major (3)

1a	HATPase_c_3-3q5lD01	D:23-198
1b	HATPase_c_3-3q5lD02	D:23-198
1c	HATPase_c_3-3q5lD03	D:23-198
1d	HATPase_c_3-3q5lD04	D:23-198

Clan: no clan defined [family: HSP90] (107)

Family: HSP90 (107)

Leishmania major (3)

2a	HSP90-3q5lD05	D:181-208
2b	HSP90-3q5lD06	D:181-208
2c	HSP90-3q5lD07	D:181-208
2d	HSP90-3q5lD08	D:181-208

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q4Q4I6_LEIMA | Q4Q4I6)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
biological process
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0006950	response to stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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