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(-) Description

Title :  CRYSTAL STRUCTURE OF PBANKA_031420
 
Authors :  A. K. Wernimont, A. Hutchinson, H. Sullivan, E. Panico, L. Crombet, D. C A. Hassani, M. Vedadi, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. W R. Hui, A. M. Neculai, M. Amani, Structural Genomics Consortium (S
Date :  28 Dec 10  (Deposition) - 01 Jun 11  (Release) - 01 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Cdpk, Plasmodium, Malaria, Calcium Dependent Protein Kinase, Phosphotransferase, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, A. Hutchinson, H. Sullivan, E. Panico, L. Crombet, D. Cossar, A. Hassani, M. Vedadi, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, R. Hui, A. M. Neculai, M. Amani
Crystal Structure Of Cdpk1 From Plasmodium Bergheii, Pbanka_031420
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN KINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15MLH
    Expression System Strain: BL21DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PB000158.03.0, PBANKA_031420
    Organism Scientific: PLASMODIUM BERGHEI
    Organism Taxid: 5821
    Strain: ANKA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2CA6Ligand/IonCALCIUM ION
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:384 , ASN A:386 , ASP A:388 , GLN A:390 , GLU A:395 , HOH A:530BINDING SITE FOR RESIDUE CA A 1
2AC2SOFTWAREASP A:428 , ASP A:430 , ASN A:432 , TYR A:434 , GLU A:436 , GLU A:439BINDING SITE FOR RESIDUE CA A 524
3AC3SOFTWAREHOH A:2 , ASP A:464 , ASP A:466 , SER A:468 , LYS A:470 , GLU A:475BINDING SITE FOR RESIDUE CA A 525
4AC4SOFTWAREHOH A:3 , ASP A:498 , ASN A:500 , ASP A:502 , MET A:504 , GLU A:509BINDING SITE FOR RESIDUE CA A 526
5AC5SOFTWAREASN A:195 , ASP A:211 , HOH A:531 , HOH A:532 , ANP A:1634BINDING SITE FOR RESIDUE CA A 528
6AC6SOFTWAREVAL A:71 , ALA A:84 , LYS A:86 , ILE A:128 , THR A:144 , GLU A:145 , PHE A:146 , TYR A:147 , GLU A:151 , ASN A:195 , LEU A:197 , ASP A:211 , CA A:528 , MG A:529 , HOH A:532 , HOH A:591 , HOH A:622BINDING SITE FOR RESIDUE ANP A 1634
7AC7SOFTWAREASP A:211 , GLU A:412 , HOH A:553 , ANP A:1634BINDING SITE FOR RESIDUE MG A 529
8AC8SOFTWAREHOH A:12 , GLU A:31 , TYR A:34 , PHE A:35 , GLN A:36 , HOH A:610 , HOH A:660BINDING SITE FOR RESIDUE CA A 527

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3Q5I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3Q5I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q5I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q5I)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q5I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:470
 aligned with Q4YRR5_PLABA | Q4YRR5 from UniProtKB/TrEMBL  Length:523

    Alignment length:491
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517 
         Q4YRR5_PLABA    28 KREDTNDGEEIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYANNINKSDQKTLCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKIC 518
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh-......hhhhhh.ee..hhhh.eeeeeeee.--.eeeeeeee.....eeeeeeee.----------------.hhhhhhhhhhhhhh........eeeeee...eeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee........eee......ee.................hhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhh--.....hhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhh.....hhhhhhhhhhh........eehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q5i A  29 GRENLY-FQGIAINPGMYVRKKEGKIGESYFKVRKLGS--YGEVLLCKEKNGHSEKAIKVIKK----------------KFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYANNINKSDQKTLCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFK--LGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKIC 518
                                 | |37        47        57       | -|       77        87  |      -       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407  |    417       427       437       447       457       467       477       487       497       507       517 
                                34 |                            65 68                    90              107                                                                                                                                                                                                                                                                                                         407  |                                                                                                            
                                  35                                                                                                                                                                                                                                                                                                                                                                                    410
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q5I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q5I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3Q5I)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q4YRR5_PLABA | Q4YRR5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0004683    calmodulin-dependent protein kinase activity    Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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