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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ACVR1 KINASE DOMAIN IN COMPLEX WITH LDN-193189
 
Authors :  A. Chaikuad, C. Sanvitale, C. D. O. Cooper, P. Mahajan, N. Daga, K. Petri I. Alfano, O. Gileadi, O. Fedorov, C. K. Allerston, T. Krojer, M. Vollm Delft, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bull Structural Genomics Consortium (Sgc)
Date :  24 Dec 10  (Deposition) - 09 Feb 11  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C (1x),D (1x)
Biol. Unit 3:  C (1x),D (1x)
Keywords :  Structural Genomics Consortium, Sgc, Protein Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. E. Sanvitale, G. Kerr, A. Chaikuad, M. C. Ramel, A. H. Mohedas, S. Reichert, Y. Wang, J. T. Triffitt, G. D. Cuny, P. B. Yu, C. S. Hill, A. N. Bullock
A New Class Of Small Molecule Inhibitor Of Bmp Signaling.
Plos One V. 8 62721 2013
PubMed-ID: 23646137  |  Reference-DOI: 10.1371/JOURNAL.PONE.0062721

(-) Compounds

Molecule 1 - ACTIVIN RECEPTOR TYPE-1
    ChainsA, B, C, D
    EC Number2.7.11.30
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF9
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPFB-LIC-BSE
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentKINASE DOMAIN, UNP RESIDUES 201-499
    GeneACVR1, ACVRLK2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymACTIVIN RECEPTOR TYPE I, ACTR-I, ACTIVIN RECEPTOR-LIKE KINASE 2, ALK-2, SERINE/THREONINE-PROTEIN KINASE RECEPTOR R1, SKR1, TGF-B SUPERFAMILY RECEPTOR TYPE I, TSR-I

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  C (1x)D (1x)
Biological Unit 3 (1x)  C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric Unit (3, 30)
No.NameCountTypeFull Name
1EDO14Ligand/Ion1,2-ETHANEDIOL
2FLC12Ligand/IonCITRATE ANION
3LDN4Ligand/Ion4-[6-(4-PIPERAZIN-1-YLPHENYL)PYRAZOLO[1,5-A]PYRIMIDIN-3-YL]QUINOLINE
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2FLC6Ligand/IonCITRATE ANION
3LDN2Ligand/Ion4-[6-(4-PIPERAZIN-1-YLPHENYL)PYRAZOLO[1,5-A]PYRIMIDIN-3-YL]QUINOLINE
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2FLC3Ligand/IonCITRATE ANION
3LDN1Ligand/Ion4-[6-(4-PIPERAZIN-1-YLPHENYL)PYRAZOLO[1,5-A]PYRIMIDIN-3-YL]QUINOLINE
Biological Unit 3 (3, 8)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2FLC3Ligand/IonCITRATE ANION
3LDN1Ligand/Ion4-[6-(4-PIPERAZIN-1-YLPHENYL)PYRAZOLO[1,5-A]PYRIMIDIN-3-YL]QUINOLINE

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:214 , VAL A:222 , ALA A:233 , LEU A:263 , THR A:283 , HIS A:284 , TYR A:285 , HIS A:286 , GLU A:287 , GLY A:289 , ASP A:293 , LYS A:340 , ASN A:341 , LEU A:343 , HOH A:555 , HOH A:836BINDING SITE FOR RESIDUE LDN A 3
02AC2SOFTWAREASP A:207 , THR A:209 , SER A:226 , TRP A:227 , GLN A:228 , HOH A:564 , VAL C:419BINDING SITE FOR RESIDUE EDO A 1
03AC3SOFTWARETHR A:271 , SER A:276 , GLN A:278 , HOH A:1113 , LDN C:4BINDING SITE FOR RESIDUE EDO A 2
04AC4SOFTWAREEDO A:4 , TYR A:294 , THR A:299 , LEU A:300 , ASP A:301 , SER A:304BINDING SITE FOR RESIDUE EDO A 500
05AC5SOFTWARETHR A:299 , EDO A:500BINDING SITE FOR RESIDUE EDO A 4
06AC6SOFTWAREARG A:380 , ASP A:438 , HOH A:929BINDING SITE FOR RESIDUE EDO A 5
07AC7SOFTWAREHOH A:163 , HIS A:284 , TYR A:285 , HIS A:286 , GLU A:287 , LYS A:345 , LYS A:346 , FLC A:502 , HOH A:1127BINDING SITE FOR RESIDUE FLC A 501
08AC8SOFTWAREHOH A:119 , HIS A:259 , GLU A:260 , ILE A:262 , LEU A:263 , GLY A:264 , HIS A:284 , HIS A:286 , LYS A:345 , FLC A:501 , HOH A:1128 , HOH A:1129BINDING SITE FOR RESIDUE FLC A 502
09AC9SOFTWAREVAL B:214 , VAL B:222 , ALA B:233 , LEU B:263 , THR B:283 , HIS B:284 , TYR B:285 , HIS B:286 , GLU B:287 , GLY B:289 , LYS B:340 , ASN B:341 , LEU B:343 , HOH B:564 , HOH B:833 , HOH B:972BINDING SITE FOR RESIDUE LDN B 1
10BC1SOFTWAREILE B:262 , LEU B:263 , GLY B:264 , HIS B:284 , HIS B:286BINDING SITE FOR RESIDUE EDO B 7
11BC2SOFTWARETYR B:294 , THR B:299 , LEU B:300 , ASP B:301 , SER B:304BINDING SITE FOR RESIDUE EDO B 8
12BC3SOFTWAREHIS B:284 , TYR B:285 , HIS B:286 , GLU B:287 , LYS B:345 , LYS B:346 , HOH B:971BINDING SITE FOR RESIDUE FLC B 5
13BC4SOFTWAREHIS B:318 , LEU B:489 , LYS B:492 , HOH B:552BINDING SITE FOR RESIDUE FLC B 6
14BC5SOFTWAREILE B:321 , LYS B:400 , THR B:487 , ALA B:488 , LEU B:489 , HOH B:514 , HOH B:565 , HOH B:979 , HOH B:1133 , ASN D:481 , SER D:483BINDING SITE FOR RESIDUE FLC B 500
15BC6SOFTWARELYS B:338 , LYS B:340 , THR B:378 , ARG B:380 , ASN B:437 , ASP B:438 , PRO B:439 , HOH B:555 , HOH B:984BINDING SITE FOR RESIDUE FLC B 501
16BC7SOFTWAREEDO A:2 , ARG A:273 , SER A:276 , HOH C:59 , VAL C:222 , ALA C:233 , LEU C:263 , THR C:283 , HIS C:284 , TYR C:285 , HIS C:286 , GLU C:287 , GLY C:289 , ASP C:293 , LYS C:340 , ASN C:341 , LEU C:343 , HOH C:537 , HOH C:846BINDING SITE FOR RESIDUE LDN C 4
17BC8SOFTWARELYS C:243 , PHE C:246 , ARG C:247 , GLU C:250 , HOH C:521 , HOH D:35 , ASN D:372BINDING SITE FOR RESIDUE EDO C 9
18BC9SOFTWAREMET C:360 , SER C:362 , GLN C:367BINDING SITE FOR RESIDUE EDO C 10
19CC1SOFTWAREASP C:269 , THR C:271 , GLN C:278 , TRP C:280BINDING SITE FOR RESIDUE EDO C 11
20CC2SOFTWAREFLC C:12 , HOH C:93 , HOH C:165 , HIS C:284 , TYR C:285 , HIS C:286 , GLU C:287 , LYS C:345 , LYS C:346BINDING SITE FOR RESIDUE FLC C 3
21CC3SOFTWAREHOH C:143 , LYS C:338 , LYS C:340 , ARG C:380 , ASP C:438 , PRO C:439 , HOH C:624 , HOH C:1108BINDING SITE FOR RESIDUE FLC C 500
22CC4SOFTWAREFLC C:3 , HOH C:155 , ARG C:258 , HIS C:259 , GLU C:260 , ILE C:262 , GLY C:264 , HIS C:284 , HIS C:286 , LYS C:345 , CYS C:351 , HOH C:1083BINDING SITE FOR RESIDUE FLC C 12
23CC5SOFTWAREVAL D:214 , VAL D:222 , ALA D:233 , LEU D:263 , THR D:283 , HIS D:284 , TYR D:285 , HIS D:286 , GLU D:287 , GLY D:289 , ASP D:293 , LYS D:340 , ASN D:341 , LEU D:343 , HOH D:556 , HOH D:847BINDING SITE FOR RESIDUE LDN D 2
24CC6SOFTWARETHR D:299 , LEU D:300 , ASP D:301 , VAL D:419BINDING SITE FOR RESIDUE EDO D 6
25CC7SOFTWAREPHE D:431 , ASP D:433 , GLN D:453 , ARG D:454 , ASN D:456 , HOH D:551 , HOH D:562 , HOH D:1111BINDING SITE FOR RESIDUE EDO D 12
26CC8SOFTWAREHOH D:30 , ARG D:380 , ASN D:437 , ASP D:438 , PRO D:439 , HOH D:1064BINDING SITE FOR RESIDUE EDO D 13
27CC9SOFTWARETRP D:227 , GLN D:228 , GLU D:230BINDING SITE FOR RESIDUE EDO D 14
28DC1SOFTWAREHIS D:284 , TYR D:285 , HIS D:286 , GLU D:287 , LYS D:345 , LYS D:346 , HOH D:501 , HOH D:521 , HOH D:574 , HOH D:619BINDING SITE FOR RESIDUE FLC D 9
29DC2SOFTWAREHIS D:259 , GLU D:260 , ILE D:262 , GLY D:264 , HIS D:284 , HIS D:286 , LYS D:345 , HOH D:619BINDING SITE FOR RESIDUE FLC D 10
30DC3SOFTWARESER B:483 , ALA B:484 , HOH D:52 , LYS D:400 , THR D:487 , ALA D:488 , LEU D:489 , HOH D:1067 , HOH D:1152BINDING SITE FOR RESIDUE FLC D 11

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:395 -C:395
2B:395 -D:395

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3Q4U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (8, 31)

Asymmetric Unit (8, 31)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_058419R202IACVR1_HUMANDisease (FOP)387906591A/B/DR202I
2UniProtVAR_028444R206HACVR1_HUMANDisease (FOP)121912678A/B/C/DR206H
3UniProtVAR_058420Q207EACVR1_HUMANDisease (FOP)  ---A/B/C/DD207E
4UniProtVAR_058421G328EACVR1_HUMANDisease (FOP)387906589A/B/C/DG328E
5UniProtVAR_058422G328RACVR1_HUMANDisease (FOP)  ---A/B/C/DG328R
6UniProtVAR_058423G328WACVR1_HUMANDisease (FOP)387906588A/B/C/DG328W
7UniProtVAR_058424G356DACVR1_HUMANDisease (FOP)121912679A/B/C/DG356D
8UniProtVAR_058425R375PACVR1_HUMANDisease (FOP)387906590A/B/C/DR375P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (8, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_058419R202IACVR1_HUMANDisease (FOP)387906591A/BR202I
2UniProtVAR_028444R206HACVR1_HUMANDisease (FOP)121912678A/BR206H
3UniProtVAR_058420Q207EACVR1_HUMANDisease (FOP)  ---A/BD207E
4UniProtVAR_058421G328EACVR1_HUMANDisease (FOP)387906589A/BG328E
5UniProtVAR_058422G328RACVR1_HUMANDisease (FOP)  ---A/BG328R
6UniProtVAR_058423G328WACVR1_HUMANDisease (FOP)387906588A/BG328W
7UniProtVAR_058424G356DACVR1_HUMANDisease (FOP)121912679A/BG356D
8UniProtVAR_058425R375PACVR1_HUMANDisease (FOP)387906590A/BR375P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (8, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_058419R202IACVR1_HUMANDisease (FOP)387906591DR202I
2UniProtVAR_028444R206HACVR1_HUMANDisease (FOP)121912678C/DR206H
3UniProtVAR_058420Q207EACVR1_HUMANDisease (FOP)  ---C/DD207E
4UniProtVAR_058421G328EACVR1_HUMANDisease (FOP)387906589C/DG328E
5UniProtVAR_058422G328RACVR1_HUMANDisease (FOP)  ---C/DG328R
6UniProtVAR_058423G328WACVR1_HUMANDisease (FOP)387906588C/DG328W
7UniProtVAR_058424G356DACVR1_HUMANDisease (FOP)121912679C/DG356D
8UniProtVAR_058425R375PACVR1_HUMANDisease (FOP)387906590C/DR375P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (8, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_058419R202IACVR1_HUMANDisease (FOP)387906591DR202I
2UniProtVAR_028444R206HACVR1_HUMANDisease (FOP)121912678C/DR206H
3UniProtVAR_058420Q207EACVR1_HUMANDisease (FOP)  ---C/DD207E
4UniProtVAR_058421G328EACVR1_HUMANDisease (FOP)387906589C/DG328E
5UniProtVAR_058422G328RACVR1_HUMANDisease (FOP)  ---C/DG328R
6UniProtVAR_058423G328WACVR1_HUMANDisease (FOP)387906588C/DG328W
7UniProtVAR_058424G356DACVR1_HUMANDisease (FOP)121912679C/DG356D
8UniProtVAR_058425R375PACVR1_HUMANDisease (FOP)387906590C/DR375P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.ACVR1_HUMAN214-235
 
 
 
  4A:214-235
B:214-235
C:214-235
D:214-235
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.ACVR1_HUMAN332-344
 
 
 
  4A:332-344
B:332-344
C:332-344
D:332-344
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.ACVR1_HUMAN214-235
 
 
 
  2A:214-235
B:214-235
-
-
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.ACVR1_HUMAN332-344
 
 
 
  2A:332-344
B:332-344
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.ACVR1_HUMAN214-235
 
 
 
  2-
-
C:214-235
D:214-235
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.ACVR1_HUMAN332-344
 
 
 
  2-
-
C:332-344
D:332-344
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.ACVR1_HUMAN214-235
 
 
 
  2-
-
C:214-235
D:214-235
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.ACVR1_HUMAN332-344
 
 
 
  2-
-
C:332-344
D:332-344

(-) Exons   (0, 0)

(no "Exon" information available for 3Q4U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:298
 aligned with ACVR1_HUMAN | Q04771 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:298
                                   211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491        
          ACVR1_HUMAN   202 RTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID 499
               SCOP domains d3q4ua_ A: automated matches                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhheeeeeeee...eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhh.........eeeeeeeee..eeeeeeee......hhhhhhh....hhhhhhhhhhhhhhhhhhhhh.........eee....hhh.eee.....eee......eeee....eee........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) I---HE------------------------------------------------------------------------------------------------------------------------E---------------------------D------------------P---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ------------------------------------------------------------------------------------------------------------------------------W--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ------------PROTEIN_KINASE_ATP    ------------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q4u A 202 RTVARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID 499
                                   211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491        

Chain B from PDB  Type:PROTEIN  Length:300
 aligned with ACVR1_HUMAN | Q04771 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:300
                                   208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498
          ACVR1_HUMAN   199 LVQRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 498
               SCOP domains d3q4ub_ B: automated matches                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..eeeeeeeeeeeee..eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhh.........eeeeeeeee..eeeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.........eee....hhh.eee.....eee......eee................hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---I---HE------------------------------------------------------------------------------------------------------------------------E---------------------------D------------------P--------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------------------------------------------W-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ---------------PROTEIN_KINASE_ATP    ------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3q4u B 199 SMQRTVARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 498
                                   208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498

Chain C from PDB  Type:PROTEIN  Length:296
 aligned with ACVR1_HUMAN | Q04771 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:296
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493      
          ACVR1_HUMAN   204 VARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID 499
               SCOP domains d3q4uc_ C: automated matches                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhheeeeeeeee..eeeeeeee..eeeeeeee...hhhhhhhhhhhhhh..........eeeeeeee....eeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.........eee....hhh.eee.....eee......eeee....eee........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) --HE------------------------------------------------------------------------------------------------------------------------E---------------------------D------------------P---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------------------------------------------------------W--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------PROTEIN_KINASE_ATP    ------------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q4u C 204 VARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID 499
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493      

Chain D from PDB  Type:PROTEIN  Length:299
 aligned with ACVR1_HUMAN | Q04771 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:299
                                   210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490         
          ACVR1_HUMAN   201 QRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID 499
               SCOP domains d3q4ud_ D: automated matches                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) TGF_be-Pkinase-3q4uD01 D:208-495                                                                                                                                                                                                                                                                       ---- Pfam domains (1)
           Pfam domains (2) TGF_be-Pkinase-3q4uD02 D:208-495                                                                                                                                                                                                                                                                       ---- Pfam domains (2)
           Pfam domains (3) TGF_be-Pkinase-3q4uD03 D:208-495                                                                                                                                                                                                                                                                       ---- Pfam domains (3)
           Pfam domains (4) TGF_be-Pkinase-3q4uD04 D:208-495                                                                                                                                                                                                                                                                       ---- Pfam domains (4)
         Sec.struct. author ..hhhhhheeeeeeeee..eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhh.........eeeeeeee....eeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.........eee....hhh.eee.....eee......eeee....eee........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -I---HE------------------------------------------------------------------------------------------------------------------------E---------------------------D------------------P---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------------------------------------------W--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE -------------PROTEIN_KINASE_ATP    ------------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q4u D 201 QRTVARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID 499
                                   210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q4U)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: PKinase (934)
(-)
Family: Pkinase (680)
1aPkinase-3q4uD01D:208-495
1bPkinase-3q4uD02D:208-495
1cPkinase-3q4uD03D:208-495
1dPkinase-3q4uD04D:208-495

(-) Gene Ontology  (64, 64)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ACVR1_HUMAN | Q04771)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046332    SMAD binding    Interacting selectively and non-covalently with a SMAD signaling protein.
    GO:0048185    activin binding    Interacting selectively and non-covalently with activin, a dimer of inhibin-beta subunits.
    GO:0016361    activin receptor activity, type I    Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals.
    GO:0019838    growth factor binding    Interacting selectively and non-covalently with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0017046    peptide hormone binding    Interacting selectively and non-covalently with any peptide with hormonal activity in animals.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0004702    signal transducer, downstream of receptor, with serine/threonine kinase activity    Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0050431    transforming growth factor beta binding    Interacting selectively and non-covalently with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types.
    GO:0005025    transforming growth factor beta receptor activity, type I    Combining with a complex of transforming growth factor beta and a type II TGF-beta receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of TGF-beta signals.
    GO:0004675    transmembrane receptor protein serine/threonine kinase activity    Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
    GO:0030509    BMP signaling pathway    A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0000082    G1/S transition of mitotic cell cycle    The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated.
    GO:0032924    activin receptor signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to an activin receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0002526    acute inflammatory response    Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response.
    GO:0003289    atrial septum primum morphogenesis    The process in which anatomical structure of an atrial septum primum is generated and organized.
    GO:0001569    branching involved in blood vessel morphogenesis    The process of coordinated growth and sprouting of blood vessels giving rise to the organized vascular system.
    GO:0060923    cardiac muscle cell fate commitment    The commitment of cells to specific cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.
    GO:0071773    cellular response to BMP stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bone morphogenetic protein (BMP) stimulus.
    GO:0071385    cellular response to glucocorticoid stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0007368    determination of left/right symmetry    The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry.
    GO:0003143    embryonic heart tube morphogenesis    The process in which the anatomical structures of the embryonic heart tube are generated and organized. The embryonic heart tube is an epithelial tube that will give rise to the mature heart.
    GO:0061445    endocardial cushion cell fate commitment    The commitment of a cell to an endocardial cushion cell fate and its capacity to differentiate into an endocardial cushion cell.
    GO:0007369    gastrulation    A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
    GO:0001702    gastrulation with mouth forming second    A gastrulation process in which the initial invagination becomes the anus and the mouth forms second.
    GO:0007281    germ cell development    The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0007498    mesoderm development    The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.
    GO:0001707    mesoderm formation    The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.
    GO:0003183    mitral valve morphogenesis    The process in which the structure of the mitral valve is generated and organized.
    GO:0032926    negative regulation of activin receptor signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any activin receptor signaling pathway.
    GO:2001237    negative regulation of extrinsic apoptotic signaling pathway    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway.
    GO:0009968    negative regulation of signal transduction    Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.
    GO:0001755    neural crest cell migration    The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo.
    GO:0060389    pathway-restricted SMAD protein phosphorylation    The process of introducing a phosphate group on to a pathway restricted SMAD protein. A pathway restricted SMAD protein is an effector protein that acts directly downstream of the transforming growth factor family receptor.
    GO:0018107    peptidyl-threonine phosphorylation    The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine.
    GO:0060037    pharyngeal system development    The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0030501    positive regulation of bone mineralization    Any process that activates or increases the frequency, rate or extent of bone mineralization.
    GO:0030335    positive regulation of cell migration    Any process that activates or increases the frequency, rate or extent of cell migration.
    GO:2000017    positive regulation of determination of dorsal identity    Any process that activates or increases the frequency, rate or extent of determination of dorsal identity.
    GO:0045669    positive regulation of osteoblast differentiation    Any process that activates or increases the frequency, rate or extent of osteoblast differentiation.
    GO:0010862    positive regulation of pathway-restricted SMAD protein phosphorylation    Any process that increases the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0030278    regulation of ossification    Any process that modulates the frequency, rate or extent of bone formation.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
    GO:0051145    smooth muscle cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary.
    GO:0007179    transforming growth factor beta receptor signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0007178    transmembrane receptor protein serine/threonine kinase signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0048179    activin receptor complex    A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed.
    GO:0045177    apical part of cell    The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACVR1_HUMAN | Q047713h9r 3mtf 3oom 4bgg 4c02 4dym

(-) Related Entries Specified in the PDB File

3mtf 3oom