3Q2U - JenaLib

Asym./Biol. Unit (Jmol Viewer)

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Title :   STRUCTURE OF HUMAN GLIOMA PATHOGENESIS-RELATED PROTEIN 1 REVEALS UNIQUE LOOPS AND SURFACE MOTIFS.

Authors :   O. A. Asojo

Date :   20 Dec 10 (Deposition) - 05 Oct 11 (Release) - 05 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym./Biol. Unit : A

Keywords :   Crisp, Human Glioma Pathogenesis-Related Protein 1 (Glipr1), Rtvp1, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. A. Asojo, R. A. Koski, N. Bonafe
Structural Studies Of Human Glioma Pathogenesis-Related Protein 1.
Acta Crystallogr. , Sect. D V. 67 847 2011
PubMed-ID: 21931216 | Reference-DOI: 10.1107/S0907444911028198

Molecule 1 - GLIOMA PATHOGENESIS-RELATED PROTEIN 1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	PICHIA PASTORIS
	Expression System Plasmid	:	PPICZALPHA
	Expression System Strain	:	X33
	Expression System Taxid	:	4922
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 22-220
	Gene	:	GLIPR, GLIPR1, RTVP1, SYNTHESIZED
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GLIPR 1, PROTEIN RTVP-1

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:82 , HIS A:87 , HOH A:316 , HOH A:370	BINDING SITE FOR RESIDUE GOL A 777
2	AC2	SOFTWARE	HOH A:5 , HOH A:14 , HIS A:79 , GLU A:98 , HIS A:137 , HOH A:389	BINDING SITE FOR RESIDUE GOL A 666
3	AC3	SOFTWARE	LYS A:84 , GLY A:178 , GLY A:179 , ASN A:180 , TYR A:181	BINDING SITE FOR RESIDUE GOL A 999
4	AC4	SOFTWARE	PHE A:77 , TRP A:101 , THR A:102 , HOH A:267	BINDING SITE FOR RESIDUE GOL A 898

Asymmetric/Biological Unit

No.	Residues
1	A:75	-	A:156
2	A:131	-	A:135
3	A:151	-	A:173
4	A:192	-	A:201
5	A:195	-	A:206

Asymmetric/Biological Unit

No.	Residues
1	Lys A:49	-	Pro A:50
2	Pro A:85	-	Pro A:86
3	Gly A:176	-	Pro A:177

Asymmetric/Biological Unit (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_061128	D	163	E	GLIP1_HUMAN	Polymorphism	28932170	A	D	163	E
2	UniProt	VAR_048833	R	211	Q	GLIP1_HUMAN	Polymorphism	3736392	A	R	211	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CRISP_1	PS01009	CRISP family signature 1.	GLIP1_HUMAN	136-146	1	A:136-146
2	CRISP_2	PS01010	CRISP family signature 2.	GLIP1_HUMAN	170-181	1	A:170-181

(no "Exon" information available for 3Q2U)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:193
 aligned with GLIP1_HUMAN | P48060 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:193
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211   
          GLIP1_HUMAN    22 ANILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNYPTWPYKRGATCSACPNNDKCLDNLCVNRQRDQV 214
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhh...........eehhhhhhhhhhhhh.......................eeeeeeee....hhhhhhhhhhhhhh.ee....ee...hhhhhhhh.....eeeeeeeee...........eeeeeeeee.......................eee..eeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------E-----------------------------------------------Q--- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------CRISP_1    -----------------------CRISP_2     --------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q2u A  22 ANILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNYPTWPYKRGATCSACPNNDKCLDNLCVNRQRDQV 214
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3Q2U)

(no "CATH Domain" information available for 3Q2U)

(no "Pfam Domain" information available for 3Q2U)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (GLIP1_HUMAN | P48060)


GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly A:176 - Pro A:177	[ RasMol ]
		Lys A:49 - Pro A:50	[ RasMol ]
		Pro A:85 - Pro A:86	[ RasMol ]

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	3q2u
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	GLIP1_HUMAN \| P48060	:	3q2r

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (5, 5)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 2)

PROSITE Motifs (2, 2)

Exons (0, 0)

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