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(-) Description

Title :  CRYSTAL STRUCTURE OF SGLIPR1 SOAKED WITH ZINC CHLORIDE
 
Authors :  O. A. Asojo
Date :  20 Dec 10  (Deposition) - 05 Oct 11  (Release) - 05 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Glioma, Crisp, Human Glioma Pathogenesis-Related Protein 1 (Glipr1), Rtvp1, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  O. A. Asojo, R. A. Koski, N. Bonafe
Structural Studies Of Human Glioma Pathogenesis-Related Protein 1.
Acta Crystallogr. , Sect. D V. 67 847 2011
PubMed-ID: 21931216  |  Reference-DOI: 10.1107/S0907444911028198

(-) Compounds

Molecule 1 - GLIOMA PATHOGENESIS-RELATED PROTEIN 1
    ChainsA
    EngineeredYES
    Expression SystemPICHIA PASTORIS
    Expression System CommonYEAST
    Expression System PlasmidPPICZALPHA
    Expression System StrainX33
    Expression System Taxid4922
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 22-220
    GeneGLIPR, GLIPR1, RTVP1, SYNTHESIZED
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGLIPR 1, PROTEIN RTVP-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:79 , HIS A:137 , HOH A:223 , HOH A:388BINDING SITE FOR RESIDUE ZN A 991

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:75 -A:156
2A:131 -A:135
3A:151 -A:173
4A:192 -A:201
5A:195 -A:206

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Lys A:49 -Pro A:50
2Pro A:85 -Pro A:86
3Gly A:176 -Pro A:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 2)

Asymmetric/Biological Unit (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_061128D163EGLIP1_HUMANPolymorphism28932170AD163E
2UniProtVAR_048833R211QGLIP1_HUMANPolymorphism3736392AR211Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CRISP_1PS01009 CRISP family signature 1.GLIP1_HUMAN136-146  1A:136-146
2CRISP_2PS01010 CRISP family signature 2.GLIP1_HUMAN170-181  1A:170-181

(-) Exons   (0, 0)

(no "Exon" information available for 3Q2R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:192
 aligned with GLIP1_HUMAN | P48060 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:192
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212  
          GLIP1_HUMAN    23 NILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNYPTWPYKRGATCSACPNNDKCLDNLCVNRQRDQV 214
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhh...........eehhhhhhhhhhhhh.......................eeeeeeee....hhhhhhhhhhhhhh.ee....ee...hhhhhhhh.....eeeeeeeee...........eeeeeeeee.......................eee..eeehhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------E-----------------------------------------------Q--- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------CRISP_1    -----------------------CRISP_2     --------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3q2r A  23 NILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNYPTWPYKRGATCSACPNNDKCLDNLCVNRQRDQV 214
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q2R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q2R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3Q2R)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GLIP1_HUMAN | P48060)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLIP1_HUMAN | P480603q2u

(-) Related Entries Specified in the PDB File

1cfe 1rc9 1smb 1u53 3q2u