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(-) Description

Title :  THE STRUCTURE OF THE CATALYTIC AND CARBOHYDRATE BINDING DOMAIN OF ENDOGLUCANASE D FROM CLOSTRIDIUM CELLULOVORANS
 
Authors :  C. M. Bianchetti, R. W. Smith, C. A. Bingman, G. N. Phillips Jr.
Date :  08 Jun 10  (Deposition) - 08 Sep 10  (Release) - 08 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Cellulase, Endoglucanase, Xylanase, Carbohydrate Binding Domain, Glucanase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Bianchetti, R. W. Smith, C. A. Bingman, G. N. Phillips Jr.
The Structure Of The Catalytic And Carbohydrate Binding Domain Of Endoglucanase D
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDOGLUCANASE D
    Chains: A, B, C, D
    EC Number: 3.2.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD/THIO-TOPO
    Expression System Strain: TOP10
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-376
    Gene: ENGD
    Organism Scientific: CLOSTRIDIUM CELLULOVORANS
    Organism Taxid: 1493
    Synonym: ENDO-1,4-BETA-GLUCANASE D, CELLULASE D
 
Molecule 2 - ENDOGLUCANASE D
    Chains: E, F, G, H
    EC Number: 3.2.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: TOP10
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 409-515
    Gene: ENGD
    Organism Scientific: CLOSTRIDIUM CELLULOVORANS
    Organism Taxid: 1493
    Synonym: ENDO-1,4-BETA-GLUCANASE D, CELLULASE D

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1BTB4Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:107 , HIS A:108 , TYR A:229 , GLU A:275 , TRP A:308 , GLU A:319 , PHE A:321 , HOH A:571 , HOH A:592 , HOH A:830BINDING SITE FOR RESIDUE BTB A 1
2AC2SOFTWAREHIS B:107 , HIS B:108 , TYR B:229 , MET B:236 , GLU B:275 , TRP B:308 , GLU B:319 , PHE B:321 , HOH B:629 , HOH B:776 , HOH B:844BINDING SITE FOR RESIDUE BTB B 1
3AC3SOFTWAREHIS C:107 , HIS C:108 , GLU C:152 , TYR C:229 , MET C:236 , GLU C:275 , TRP C:308 , GLU C:319 , PHE C:321 , HOH C:539 , HOH C:811BINDING SITE FOR RESIDUE BTB C 1
4AC4SOFTWAREHIS D:107 , HIS D:108 , TYR D:229 , MET D:236 , GLU D:275 , TRP D:308 , GLU D:319 , PHE D:321 , HOH D:536 , HOH D:638BINDING SITE FOR RESIDUE BTB D 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NDY)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:75 -Pro A:76
2Ser A:230 -Pro A:231
3Ala B:75 -Pro B:76
4Ser B:230 -Pro B:231
5Ala C:75 -Pro C:76
6Ser C:230 -Pro C:231
7Ala D:75 -Pro D:76
8Ser D:230 -Pro D:231

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NDY)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F5PS00659 Glycosyl hydrolases family 5 signature.GUND_CLOC7173-182
 
 
 		  4A:145-154
B:145-154
C:145-154
D:145-154

(-) Exons   (0, 0)

(no "Exon" information available for 3NDY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:345
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:345
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371     
           GUND_CLOC7    32 STAFTGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASNEWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 376
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhh.eee...................hhhhhhhhhhhh..eeee................hhhhhhhhhhhhhhhhh...eeee..............hhhhhhhhhhhhhhhhhhhh......eeee........hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhh.hhhhhhh..hhhhh..eeeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhh...eeee................ee....ee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ndy A   4 STAFTGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASLQWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 348
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343     


Chain B from PDB  Type:PROTEIN  Length:345
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:345
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371     
           GUND_CLOC7    32 STAFTGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASNEWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 376
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhh.eeee..................hhhhhhhhhhhh..eeee................hhhhhhhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhhhhhhhhhhh......eeee........hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhh.hhhhhhhh.hhhhh..eeeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhh...eeeeee..............ee....ee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ndy B   4 STAFTGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASLQWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 348
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343     


Chain C from PDB  Type:PROTEIN  Length:341
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:341
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375 
           GUND_CLOC7    36 TGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASNEWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 376
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh.eeee..................hhhhhhhhhhhh..eeee................hhhhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhh.....eeee........hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhh.hhhhhhhh.hhhhh..eeeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhh...eeeeee..............ee....ee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ndy C   8 TGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASLQWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 348
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347 


Chain D from PDB  Type:PROTEIN  Length:345
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:345
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371     
           GUND_CLOC7    32 STAFTGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASNEWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 376
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------Cellulase-3ndyD01 D:27-313                                                                                                                                                                                                                                                                     ----------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------Cellulase-3ndyD02 D:27-313                                                                                                                                                                                                                                                                     ----------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------Cellulase-3ndyD03 D:27-313                                                                                                                                                                                                                                                                     ----------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------Cellulase-3ndyD04 D:27-313                                                                                                                                                                                                                                                                     ----------------------------------- Pfam domains (4)
         Sec.struct. author ..........hhhhhhhhhh.eeee..................hhhhhhhhhhhh..eeee................hhhhhhhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhhhhhhhhhhh......eeee........hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhh.hhhhhhhh.hhhhh..eeeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhh...eeeeee..............ee....ee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ndy D   4 STAFTGVRDVPAQQIVNEMKVGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGASLQWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPIWWDNGYSVAGKAETFGIFNRSNLTWDAPEVMKAFIKGIGGSS 348
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343     


Chain E from PDB  Type:PROTEIN  Length:107
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:107
                                   418       428       438       448       458       468       478       488       498       508       
           GUND_CLOC7   409 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 515
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeeeeee.....ee..eeeee.....eeeeee.eeeeee..eeeeee.....ee....eeeeeeeeee...........ee..ee.ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 3ndy E 381 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 487
                                   390       400       410       420       430       440       450       460       470       480       


Chain F from PDB  Type:PROTEIN  Length:107
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:107
                                   418       428       438       448       458       468       478       488       498       508       
           GUND_CLOC7   409 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 515
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeeeeee.....ee..eeeee....eeeeeee.eeeeee..eeeeee.....ee....eeeeeeeeeee..........ee..ee.ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 3ndy F 381 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 487
                                   390       400       410       420       430       440       450       460       470       480       


Chain G from PDB  Type:PROTEIN  Length:107
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:107
                                   418       428       438       448       458       468       478       488       498       508       
           GUND_CLOC7   409 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 515
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeeeeee.....ee..eeeee....eeeeeee.eeeeee..eeeeee.....ee....eeeeeeeeeee..........ee..ee.ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 3ndy G 381 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 487
                                   390       400       410       420       430       440       450       460       470       480       


Chain H from PDB  Type:PROTEIN  Length:107
 aligned with GUND_CLOC7 | P28623 from UniProtKB/Swiss-Prot  Length:515

    Alignment length:107
                                   418       428       438       448       458       468       478       488       498       508       
           GUND_CLOC7   409 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 515
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --CBM_2-3ndyH01 H:383-484                                                                               --- Pfam domains (1)
           Pfam domains (2) --CBM_2-3ndyH02 H:383-484                                                                               --- Pfam domains (2)
           Pfam domains (3) --CBM_2-3ndyH03 H:383-484                                                                               --- Pfam domains (3)
           Pfam domains (4) --CBM_2-3ndyH04 H:383-484                                                                               --- Pfam domains (4)
         Sec.struct. author ..eeeeeeeeee...eeeeeeeeee.....ee..eeeee....eeeeeee.eeeeee..eeeeee.....ee....eeeeeeeeeee..........ee..ee.ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 3ndy H 381 SAVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFTVNGTECTVK 487
                                   390       400       410       420       430       440       450       460       470       480
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NDY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NDY)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: CBD (21)
(-)
Clan: Glyco_hydro_tim (488)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (GUND_CLOC7 | P28623)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0008810    cellulase activity    Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0030247    polysaccharide binding    Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0030245    cellulose catabolic process    The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

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  Cis Peptide Bonds
    Ala A:75 - Pro A:76   [ RasMol ]  
    Ala B:75 - Pro B:76   [ RasMol ]  
    Ala C:75 - Pro C:76   [ RasMol ]  
    Ala D:75 - Pro D:76   [ RasMol ]  
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        GUND_CLOC7 | P28623: 3ndz

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3ndz