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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN LYASE R41M MUTANT
 
Authors :  Z. Fu, J. A. Runquist, C. Montgomery, H. M. Miziorko, J. -J. P. Kim
Date :  24 Apr 10  (Deposition) - 16 Jun 10  (Release) - 24 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Ketogenic Enzyme, Human Hmg-Coa Lyase, R41M, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Fu, J. A. Runquist, C. Montgomery, H. M. Miziorko, J. J. Kim
Functional Insights Into Human Hmg-Coa Lyase From Structure Of Acyl-Coa-Containing Ternary Complexes.
J. Biol. Chem. V. 285 26341 2010
PubMed-ID: 20558737  |  Reference-DOI: 10.1074/JBC.M110.139931

(-) Compounds

Molecule 1 - HYDROXYMETHYLGLUTARYL-COA LYASE
    ChainsA, B, C, D, E, F
    EC Number4.1.3.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTRC-HL1
    Expression System StrainJM105
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneHMGCL
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHMG-COA LYASE, HL, 3-HYDROXY-3-METHYLGLUTARATE-COA LYASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3MP4)

(-) Sites  (0, 0)

(no "Site" information available for 3MP4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MP4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MP4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (19, 114)

Asymmetric Unit (19, 114)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_058440E37KHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FE37K
02UniProtVAR_003744R41QHMGCL_HUMANDisease (HMGCLD)121964997A/B/C/D/E/FM41Q
03UniProtVAR_003745D42EHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FD42E
04UniProtVAR_003746D42GHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FD42G
05UniProtVAR_003747D42HHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FD42H
06UniProtVAR_058441K48NHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FK48N
07UniProtVAR_003748V70LHMGCL_HUMANDisease (HMGCLD)121964996A/B/C/D/E/FV70L
08UniProtVAR_058442S75RHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FS75R
09UniProtVAR_058443S142FHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FS142F
10UniProtVAR_065453R165QHMGCL_HUMANDisease (HMGCLD)199587895A/B/C/D/E/FR165Q
11UniProtVAR_058444C174YHMGCL_HUMANDisease (HMGCLD)765475941A/B/C/D/E/FC174Y
12UniProtVAR_058445F192SHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FF192S
13UniProtVAR_058446I200FHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FI200F
14UniProtVAR_058447S201YHMGCL_HUMANDisease (HMGCLD)760106433A/B/C/D/E/FS201Y
15UniProtVAR_058448G203EHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FG203E
16UniProtVAR_058449D204NHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FD204N
17UniProtVAR_003749H233RHMGCL_HUMANDisease (HMGCLD)727503963A/B/C/D/E/FH233R
18UniProtVAR_058450L263PHMGCL_HUMANDisease (HMGCLD)  ---A/B/C/D/E/FL263P
19UniProtVAR_014202E279KHMGCL_HUMANDisease (HMGCLD)28934894A/B/C/D/E/FE279K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (19, 38)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_058440E37KHMGCL_HUMANDisease (HMGCLD)  ---A/BE37K
02UniProtVAR_003744R41QHMGCL_HUMANDisease (HMGCLD)121964997A/BM41Q
03UniProtVAR_003745D42EHMGCL_HUMANDisease (HMGCLD)  ---A/BD42E
04UniProtVAR_003746D42GHMGCL_HUMANDisease (HMGCLD)  ---A/BD42G
05UniProtVAR_003747D42HHMGCL_HUMANDisease (HMGCLD)  ---A/BD42H
06UniProtVAR_058441K48NHMGCL_HUMANDisease (HMGCLD)  ---A/BK48N
07UniProtVAR_003748V70LHMGCL_HUMANDisease (HMGCLD)121964996A/BV70L
08UniProtVAR_058442S75RHMGCL_HUMANDisease (HMGCLD)  ---A/BS75R
09UniProtVAR_058443S142FHMGCL_HUMANDisease (HMGCLD)  ---A/BS142F
10UniProtVAR_065453R165QHMGCL_HUMANDisease (HMGCLD)199587895A/BR165Q
11UniProtVAR_058444C174YHMGCL_HUMANDisease (HMGCLD)765475941A/BC174Y
12UniProtVAR_058445F192SHMGCL_HUMANDisease (HMGCLD)  ---A/BF192S
13UniProtVAR_058446I200FHMGCL_HUMANDisease (HMGCLD)  ---A/BI200F
14UniProtVAR_058447S201YHMGCL_HUMANDisease (HMGCLD)760106433A/BS201Y
15UniProtVAR_058448G203EHMGCL_HUMANDisease (HMGCLD)  ---A/BG203E
16UniProtVAR_058449D204NHMGCL_HUMANDisease (HMGCLD)  ---A/BD204N
17UniProtVAR_003749H233RHMGCL_HUMANDisease (HMGCLD)727503963A/BH233R
18UniProtVAR_058450L263PHMGCL_HUMANDisease (HMGCLD)  ---A/BL263P
19UniProtVAR_014202E279KHMGCL_HUMANDisease (HMGCLD)28934894A/BE279K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (19, 38)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_058440E37KHMGCL_HUMANDisease (HMGCLD)  ---C/DE37K
02UniProtVAR_003744R41QHMGCL_HUMANDisease (HMGCLD)121964997C/DM41Q
03UniProtVAR_003745D42EHMGCL_HUMANDisease (HMGCLD)  ---C/DD42E
04UniProtVAR_003746D42GHMGCL_HUMANDisease (HMGCLD)  ---C/DD42G
05UniProtVAR_003747D42HHMGCL_HUMANDisease (HMGCLD)  ---C/DD42H
06UniProtVAR_058441K48NHMGCL_HUMANDisease (HMGCLD)  ---C/DK48N
07UniProtVAR_003748V70LHMGCL_HUMANDisease (HMGCLD)121964996C/DV70L
08UniProtVAR_058442S75RHMGCL_HUMANDisease (HMGCLD)  ---C/DS75R
09UniProtVAR_058443S142FHMGCL_HUMANDisease (HMGCLD)  ---C/DS142F
10UniProtVAR_065453R165QHMGCL_HUMANDisease (HMGCLD)199587895C/DR165Q
11UniProtVAR_058444C174YHMGCL_HUMANDisease (HMGCLD)765475941C/DC174Y
12UniProtVAR_058445F192SHMGCL_HUMANDisease (HMGCLD)  ---C/DF192S
13UniProtVAR_058446I200FHMGCL_HUMANDisease (HMGCLD)  ---C/DI200F
14UniProtVAR_058447S201YHMGCL_HUMANDisease (HMGCLD)760106433C/DS201Y
15UniProtVAR_058448G203EHMGCL_HUMANDisease (HMGCLD)  ---C/DG203E
16UniProtVAR_058449D204NHMGCL_HUMANDisease (HMGCLD)  ---C/DD204N
17UniProtVAR_003749H233RHMGCL_HUMANDisease (HMGCLD)727503963C/DH233R
18UniProtVAR_058450L263PHMGCL_HUMANDisease (HMGCLD)  ---C/DL263P
19UniProtVAR_014202E279KHMGCL_HUMANDisease (HMGCLD)28934894C/DE279K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (19, 38)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_058440E37KHMGCL_HUMANDisease (HMGCLD)  ---E/FE37K
02UniProtVAR_003744R41QHMGCL_HUMANDisease (HMGCLD)121964997E/FM41Q
03UniProtVAR_003745D42EHMGCL_HUMANDisease (HMGCLD)  ---E/FD42E
04UniProtVAR_003746D42GHMGCL_HUMANDisease (HMGCLD)  ---E/FD42G
05UniProtVAR_003747D42HHMGCL_HUMANDisease (HMGCLD)  ---E/FD42H
06UniProtVAR_058441K48NHMGCL_HUMANDisease (HMGCLD)  ---E/FK48N
07UniProtVAR_003748V70LHMGCL_HUMANDisease (HMGCLD)121964996E/FV70L
08UniProtVAR_058442S75RHMGCL_HUMANDisease (HMGCLD)  ---E/FS75R
09UniProtVAR_058443S142FHMGCL_HUMANDisease (HMGCLD)  ---E/FS142F
10UniProtVAR_065453R165QHMGCL_HUMANDisease (HMGCLD)199587895E/FR165Q
11UniProtVAR_058444C174YHMGCL_HUMANDisease (HMGCLD)765475941E/FC174Y
12UniProtVAR_058445F192SHMGCL_HUMANDisease (HMGCLD)  ---E/FF192S
13UniProtVAR_058446I200FHMGCL_HUMANDisease (HMGCLD)  ---E/FI200F
14UniProtVAR_058447S201YHMGCL_HUMANDisease (HMGCLD)760106433E/FS201Y
15UniProtVAR_058448G203EHMGCL_HUMANDisease (HMGCLD)  ---E/FG203E
16UniProtVAR_058449D204NHMGCL_HUMANDisease (HMGCLD)  ---E/FD204N
17UniProtVAR_003749H233RHMGCL_HUMANDisease (HMGCLD)727503963E/FH233R
18UniProtVAR_058450L263PHMGCL_HUMANDisease (HMGCLD)  ---E/FL263P
19UniProtVAR_014202E279KHMGCL_HUMANDisease (HMGCLD)28934894E/FE279K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYR_CTPS50991 Pyruvate carboxyltransferase domain.HMGCL_HUMAN33-300
 
 
 
 
 
  6A:33-300
B:33-300
C:33-300
D:33-300
E:33-300
F:33-300
2HMG_COA_LYASEPS01062 Hydroxymethylglutaryl-coenzyme A lyase active site.HMGCL_HUMAN259-268
 
 
 
 
 
  6A:259-268
B:259-268
C:259-268
D:259-268
E:259-268
F:259-265
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYR_CTPS50991 Pyruvate carboxyltransferase domain.HMGCL_HUMAN33-300
 
 
 
 
 
  2A:33-300
B:33-300
-
-
-
-
2HMG_COA_LYASEPS01062 Hydroxymethylglutaryl-coenzyme A lyase active site.HMGCL_HUMAN259-268
 
 
 
 
 
  2A:259-268
B:259-268
-
-
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYR_CTPS50991 Pyruvate carboxyltransferase domain.HMGCL_HUMAN33-300
 
 
 
 
 
  2-
-
C:33-300
D:33-300
-
-
2HMG_COA_LYASEPS01062 Hydroxymethylglutaryl-coenzyme A lyase active site.HMGCL_HUMAN259-268
 
 
 
 
 
  2-
-
C:259-268
D:259-268
-
-
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYR_CTPS50991 Pyruvate carboxyltransferase domain.HMGCL_HUMAN33-300
 
 
 
 
 
  2-
-
-
-
E:33-300
F:33-300
2HMG_COA_LYASEPS01062 Hydroxymethylglutaryl-coenzyme A lyase active site.HMGCL_HUMAN259-268
 
 
 
 
 
  2-
-
-
-
E:259-268
F:259-265

(-) Exons   (8, 48)

Asymmetric Unit (8, 48)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3aENST000003744903aENSE00001600452chr1:24151949-24151846104HMGCL_HUMAN1-20200--
1.5ENST000003744905ENSE00001663468chr1:24147083-2414700084HMGCL_HUMAN21-48286A:28-48
B:28-48
C:28-48
D:28-48
E:28-48
F:28-48
21
21
21
21
21
21
1.6aENST000003744906aENSE00001745098chr1:24144073-24143966108HMGCL_HUMAN49-84366A:49-84
B:49-84
C:49-84
D:49-84
E:49-84
F:49-84
36
36
36
36
36
36
1.7aENST000003744907aENSE00001639422chr1:24143260-2414316596HMGCL_HUMAN85-116326A:85-116
B:85-116
C:85-116
D:85-116
E:85-116
F:85-116
32
32
32
32
32
32
1.8aENST000003744908aENSE00000758310chr1:24140828-24140680149HMGCL_HUMAN117-166506A:117-166
B:117-166
C:117-166
D:117-166
E:117-166
F:117-166 (gaps)
50
50
50
50
50
50
1.9aENST000003744909aENSE00000758311chr1:24137289-2413722664HMGCL_HUMAN166-187226A:166-187
B:166-187
C:166-187
D:166-187
E:166-187
F:166-187
22
22
22
22
22
22
1.10aENST0000037449010aENSE00000758312chr1:24134813-24134625189HMGCL_HUMAN188-250636A:188-250
B:188-250
C:188-250
D:188-250
E:188-250
F:188-250
63
63
63
63
63
63
1.13aENST0000037449013aENSE00000758313chr1:24131015-24130890126HMGCL_HUMAN251-292426A:251-292
B:251-292
C:251-292
D:251-292
E:251-292
F:251-292 (gaps)
42
42
42
42
42
42
1.14cENST0000037449014cENSE00001463651chr1:24129054-24128375680HMGCL_HUMAN293-325336A:293-323
B:293-323
C:293-323
D:293-323
E:293-323
F:293-323
31
31
31
31
31
31

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:296
 aligned with HMGCL_HUMAN | P35914 from UniProtKB/Swiss-Prot  Length:325

    Alignment length:296
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      
          HMGCL_HUMAN    28 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...hhhhhh.....hhhhhhhhhhhhhhh...ee..........hhhhhhhhhhhhhh.........ee..hhhhhhhhhhh...eeeeeee.hhhhhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee...........hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh...eeee..................hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------K---QE-----N---------------------L----R------------------------------------------------------------------F----------------------Q--------Y-----------------S-------FY-EN----------------------------R-----------------------------P---------------K-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                PROSITE (1) -----PYR_CT  PDB: A:33-300 UniProt: 33-300                                                                                                                                                                                                                                       ----------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_LY------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: A:28-4Exon 1.6a  PDB: A:49-84             Exon 1.7a  PDB: A:85-116        Exon 1.8a  PDB: A:117-166 UniProt: 117-166        ---------------------Exon 1.10a  PDB: A:188-250 UniProt: 188-250                    Exon 1.13a  PDB: A:251-292                Exon 1.14c  PDB: A:293-323      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a             ---------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3mp4 A  28 TLPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      

Chain B from PDB  Type:PROTEIN  Length:296
 aligned with HMGCL_HUMAN | P35914 from UniProtKB/Swiss-Prot  Length:325

    Alignment length:296
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      
          HMGCL_HUMAN    28 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...hhhhhh.....hhhhhhhhhhhhhhhh..ee..ee......hhhhhhhhhhhhhh.........ee..hhhhhhhhhhh...eee..ee.hhhhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee...........hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh...eeee..................hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------K---QE-----N---------------------L----R------------------------------------------------------------------F----------------------Q--------Y-----------------S-------FY-EN----------------------------R-----------------------------P---------------K-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                PROSITE (1) -----PYR_CT  PDB: B:33-300 UniProt: 33-300                                                                                                                                                                                                                                       ----------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_LY------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: B:28-4Exon 1.6a  PDB: B:49-84             Exon 1.7a  PDB: B:85-116        Exon 1.8a  PDB: B:117-166 UniProt: 117-166        ---------------------Exon 1.10a  PDB: B:188-250 UniProt: 188-250                    Exon 1.13a  PDB: B:251-292                Exon 1.14c  PDB: B:293-323      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a             ---------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3mp4 B  28 TLPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      

Chain C from PDB  Type:PROTEIN  Length:296
 aligned with HMGCL_HUMAN | P35914 from UniProtKB/Swiss-Prot  Length:325

    Alignment length:296
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      
          HMGCL_HUMAN    28 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...hhhhhh.....hhhhhhhhhhhhhhhh..ee..ee......hhhhhhhhhhhhhh.........ee..hhhhhhhhhhh...eeeeeee.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeee...........hhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh...eeee..................hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh......hhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------K---QE-----N---------------------L----R------------------------------------------------------------------F----------------------Q--------Y-----------------S-------FY-EN----------------------------R-----------------------------P---------------K-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                PROSITE (1) -----PYR_CT  PDB: C:33-300 UniProt: 33-300                                                                                                                                                                                                                                       ----------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_LY------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: C:28-4Exon 1.6a  PDB: C:49-84             Exon 1.7a  PDB: C:85-116        Exon 1.8a  PDB: C:117-166 UniProt: 117-166        ---------------------Exon 1.10a  PDB: C:188-250 UniProt: 188-250                    Exon 1.13a  PDB: C:251-292                Exon 1.14c  PDB: C:293-323      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a             ---------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3mp4 C  28 TLPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      

Chain D from PDB  Type:PROTEIN  Length:296
 aligned with HMGCL_HUMAN | P35914 from UniProtKB/Swiss-Prot  Length:325

    Alignment length:296
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      
          HMGCL_HUMAN    28 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...hhhhhh.....hhhhhhhhhhhhhhh...ee..........hhhhhhhhhhhhhh.........ee..hhhhhhhhhhh...eeeeeee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...........hhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh...eeee..................hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------K---QE-----N---------------------L----R------------------------------------------------------------------F----------------------Q--------Y-----------------S-------FY-EN----------------------------R-----------------------------P---------------K-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                PROSITE (1) -----PYR_CT  PDB: D:33-300 UniProt: 33-300                                                                                                                                                                                                                                       ----------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_LY------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: D:28-4Exon 1.6a  PDB: D:49-84             Exon 1.7a  PDB: D:85-116        Exon 1.8a  PDB: D:117-166 UniProt: 117-166        ---------------------Exon 1.10a  PDB: D:188-250 UniProt: 188-250                    Exon 1.13a  PDB: D:251-292                Exon 1.14c  PDB: D:293-323      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a             ---------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3mp4 D  28 TLPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      

Chain E from PDB  Type:PROTEIN  Length:296
 aligned with HMGCL_HUMAN | P35914 from UniProtKB/Swiss-Prot  Length:325

    Alignment length:296
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      
          HMGCL_HUMAN    28 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...hhhhhh.....hhhhhhhhhhhhhhhh..ee..ee......hhhhhhhhhhhhhh.........ee..hhhhhhhhhhh...eeeeeee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...........hhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh...eeee..................hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------K---QE-----N---------------------L----R------------------------------------------------------------------F----------------------Q--------Y-----------------S-------FY-EN----------------------------R-----------------------------P---------------K-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                PROSITE (1) -----PYR_CT  PDB: E:33-300 UniProt: 33-300                                                                                                                                                                                                                                       ----------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_LY------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: E:28-4Exon 1.6a  PDB: E:49-84             Exon 1.7a  PDB: E:85-116        Exon 1.8a  PDB: E:117-166 UniProt: 117-166        ---------------------Exon 1.10a  PDB: E:188-250 UniProt: 188-250                    Exon 1.13a  PDB: E:251-292                Exon 1.14c  PDB: E:293-323      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a             ---------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3mp4 E  28 TLPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      

Chain F from PDB  Type:PROTEIN  Length:287
 aligned with HMGCL_HUMAN | P35914 from UniProtKB/Swiss-Prot  Length:325

    Alignment length:296
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      
          HMGCL_HUMAN    28 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------HMGL-like-3mp4F01 F:41-289                                                                                                                                                                                                                               ---------------------------------- Pfam domains (1)
           Pfam domains (2) -------------HMGL-like-3mp4F02 F:41-289                                                                                                                                                                                                                               ---------------------------------- Pfam domains (2)
           Pfam domains (3) -------------HMGL-like-3mp4F03 F:41-289                                                                                                                                                                                                                               ---------------------------------- Pfam domains (3)
           Pfam domains (4) -------------HMGL-like-3mp4F04 F:41-289                                                                                                                                                                                                                               ---------------------------------- Pfam domains (4)
           Pfam domains (5) -------------HMGL-like-3mp4F05 F:41-289                                                                                                                                                                                                                               ---------------------------------- Pfam domains (5)
           Pfam domains (6) -------------HMGL-like-3mp4F06 F:41-289                                                                                                                                                                                                                               ---------------------------------- Pfam domains (6)
         Sec.struct. author ......eeee.....hhhhh....hhhhhhhhhhhhhhh...ee...............hhhhhhhhh.........ee..hhhhhhhhhh....eeeeeee.hhhhhhh---.hhhhhhhhhhhhhhhhhhh..eeeeeee...........hhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh...eeee.......------.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.....hhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------K---QE-----N---------------------L----R------------------------------------------------------------------F----------------------Q--------Y-----------------S-------FY-EN----------------------------R-----------------------------P---------------K-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                PROSITE (1) -----PYR_CT  PDB: F:33-300 UniProt: 33-300                                                                                                                                                                                                                                       ----------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_LY------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: F:28-4Exon 1.6a  PDB: F:49-84             Exon 1.7a  PDB: F:85-116        Exon 1.8a  PDB: F:117-166 (gaps) UniProt: 117-166 ---------------------Exon 1.10a  PDB: F:188-250 UniProt: 188-250                    Exon 1.13a  PDB: F:251-292 (gaps)         Exon 1.14c  PDB: F:293-323      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a             ---------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3mp4 F  28 TLPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKK---CSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGG------ASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 323
                                    37        47        57        67        77        87        97       107       117       127       137   |   147       157       167       177       187       197       207       217       227       237       247       257       | -    |  277       287       297       307       317      
                                                                                                                                       137 141                                                                                                                         265    272                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MP4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MP4)

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (23, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (HMGCL_HUMAN | P35914)
molecular function
    GO:0031406    carboxylic acid binding    Interacting selectively and non-covalently with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000062    fatty-acyl-CoA binding    Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group.
    GO:0004419    hydroxymethylglutaryl-CoA lyase activity    Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0006637    acyl-CoA metabolic process    The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group.
    GO:0046951    ketone body biosynthetic process    The chemical reactions and pathways resulting in the formation of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Biosynthesis involves the formation of hydroxymethylglutaryl-CoA, which is cleaved to acetate and acetyl-CoA.
    GO:0006552    leucine catabolic process    The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid.
    GO:0001889    liver development    The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
    GO:0007005    mitochondrion organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:0070542    response to fatty acid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus.
    GO:0007584    response to nutrient    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
    GO:0042594    response to starvation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HMGCL_HUMAN | P359142cw6 3mp3 3mp5

(-) Related Entries Specified in the PDB File

2cw6 HUMAN LYASE WILD TYPE
3mp3
3mp5