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(-) Description

Title :  CRYSTAL STRUCTURE OF EXTRAGENIC SUPPRESSOR PROTEIN SUHB FROM BARTONELLA HENSELAE, VIA COMBINED IODIDE SAD MOLECULAR REPLACEMENT
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  18 Feb 10  (Deposition) - 02 Mar 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Niaid, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Bartonella, Cat Scratch Disease, Iodide Phasing, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Abendroth, A. S. Gardberg, J. I. Robinson, J. S. Christensen, B. L. Staker, P. J. Myler, L. J. Stewart, T. E. Edwards
Sad Phasing Using Iodide Ions In A High-Throughput Structural Genomics Environment.
J Struct Funct Genomics V. 12 83 2011
PubMed-ID: 21359836  |  Reference-DOI: 10.1007/S10969-011-9101-7

(-) Compounds

Molecule 1 - EXTRAGENIC SUPPRESSOR PROTEIN SUHB
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: AVA0421
    Expression System Vector Type: PLASMID
    Gene: SUHB, BH15030
    Organism Common: ROCHALIMAEA HENSELAE
    Organism Scientific: BARTONELLA HENSELAE
    Organism Taxid: 38323

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1IOD13Ligand/IonIODIDE ION
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:69 , ASP A:86 , LEU A:88 , THR A:91 , HOH A:313 , HOH A:314BINDING SITE FOR RESIDUE MG A 264
02AC2SOFTWAREGLU B:69 , ASP B:86 , LEU B:88 , HOH B:295 , HOH B:311BINDING SITE FOR RESIDUE MG B 264
03AC3SOFTWAREPHE B:64BINDING SITE FOR RESIDUE IOD B 265
04AC4SOFTWARELYS B:63BINDING SITE FOR RESIDUE IOD B 266
05AC5SOFTWAREARG A:131 , ARG A:223 , IOD A:272 , HOH A:338BINDING SITE FOR RESIDUE IOD A 267
06AC6SOFTWAREALA A:146BINDING SITE FOR RESIDUE IOD A 268
07AC7SOFTWAREMET A:178BINDING SITE FOR RESIDUE IOD A 270
08AC8SOFTWARETHR B:128 , GLU B:130BINDING SITE FOR RESIDUE IOD B 267
09AC9SOFTWAREARG A:186BINDING SITE FOR RESIDUE IOD A 271
10BC1SOFTWAREARG A:131 , ARG B:223 , VAL B:229BINDING SITE FOR RESIDUE IOD B 269
11BC2SOFTWAREILE A:113 , ARG A:131 , IOD A:267BINDING SITE FOR RESIDUE IOD A 272

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LUZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LUZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LUZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LUZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3LUZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
 aligned with A0A0H3M6W8_B | A0A0H3M6W8 from UniProtKB/TrEMBL  Length:263

    Alignment length:258
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        
         A0A0H3M6W8_B     4 SAVMNVMVQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATGMPHLGRPGHGTYLIELRNVMAEVSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNIIAGNEHIRIKLERALKK 261
               SCOP domains d3luza_ A: automated mat            ches                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh------------hhhhhhhhhhhhhhhhhhhhhh..eeeee.........eeeeeeeeeeeehhhhhhhh....eeeeeeee..eeeeeeeee....eeeeee...eeee..eee......hhhh.eeee...--------hhhhhhhhhhhhh.eee....hhhhhhhhhh....eeee...hhhhhhhhhhhhhhh..eee......hhhhhh.eeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3luz A   4 SAVMNVMVQAAMKAGRSLVRDYGE------------DYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATGMP--------TYLIELRNVMAEVSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNIIAGNEHIRIKLERALKK 261
                                    13        23   |     -      | 43        53        63        73        83        93       103       113       123       133       143       153      |  -     | 173       183       193       203       213       223       233       243       253        
                                                  27           40                                                                                                                     160      169                                                                                            


Chain B from PDB  Type:PROTEIN  Length:234
 aligned with A0A0H3M6W8_B | A0A0H3M6W8 from UniProtKB/TrEMBL  Length:263

    Alignment length:260
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
         A0A0H3M6W8_B     2 PQSAVMNVMVQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATGMPHLGRPGHGTYLIELRNVMAEVSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNIIAGNEHIRIKLERALKK 261
               SCOP domains d3luzb_ B: automated matc             hes                                                                                                                                                                                                                            SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh-------------hhhhhhhhhhhhhhhhhhhh.....eeee.---........eeeeeeeeehhhhhhhh....eeeeeeee..eeeeeeeee....eeeeee...eeee..ee.......hhhh.eeee..----------hhhhhhhhhh...eee...hhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh..eee......hhhhhh.eeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3luz B   2 PQSAVMNVMVQAAMKAGRSLVRDYG-------------DYVSQADRKAEKIIFNELSKARPKFGFLME---EIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATGM----------YLIELRNVMAEVSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNIIAGNEHIRIKLERALKK 261
                                    11        21    |    -        41        51        61       | - |      81        91       101       111       121       131       141       151       | -       171       181       191       201       211       221       231       241       251       261
                                                   26            40                           69  73                                                                                   159        170
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LUZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3LUZ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3LUZ)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3M6W8_B | A0A0H3M6W8: 3lv0

(-) Related Entries Specified in the PDB File

3lv0 NATIVE STRUCTURE RELATED ID: BAHEA.00759.A RELATED DB: TARGETDB