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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF HSP90 FROM LEISHMANIA MAJOR, LMJF33.0312
 
Authors :  A. K. Wernimont, W. Tempel, J. Walker, Y. H. Lin, A Hutchinson, F. Macke A. Fairlamb, I. Kozieradzki, D. Cossar, Y. Zhao, M. Schapira, A. Bochk C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, M. A. J. Fergus J. C. Pizarro, T. Hills
Date :  21 May 09  (Deposition) - 02 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Biol. Unit 2:  A  (2x)
Keywords :  Sleeping Sickness, Leishmania, Heat Shock Protein, Structural Genomics, Stress Response Protein, Chaperone, Structural Genomics Consortium, Sgc, Stress Response (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, W. Tempel, Y. H. Lin, A Hutchinson, F. Mackenzie, A. Fairlamb, I. Kozieradzki, D. Cossar, Y. Zhao, M. Schapira, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelts, A. M. Edwards M. A. J. Ferguson, R. Hui, J. C. Pizarro, T. Hills
Crystal Structure Of The Middle And Carboxy-Terminal Domain Of Hsp90 From Leishmania Major, Lmjf33. 0312
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 83-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 265-690
    Gene: LMJF33.0312, LMJF33.0314, LMJF33.0316, LMJF33.0320, LMJF33.0323, LMJF33.0326, LMJF33.0333, LMJF33.0336, LMJF33.0340, LMJF33.0343, LMJF33.0346, LMJF33.0350, LMJF33.0355, LMJF33.0360, LMJF33.0365
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664
    Strain: FRIEDLIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1SO412Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:66 , PRO A:87 , ASP A:88 , ARG A:121BINDING SITE FOR RESIDUE SO4 A 427
2AC2SOFTWAREPRO A:304 , LEU A:374 , THR A:377 , SER A:378 , ALA A:393 , ASN A:397BINDING SITE FOR RESIDUE SO4 A 428

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HJC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HJC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HJC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HJC)

(-) Exons   (0, 0)

(no "Exon" information available for 3HJC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:387
 aligned with Q4Q4I6_LEIMA | Q4Q4I6 from UniProtKB/TrEMBL  Length:701

    Alignment length:405
                                   274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664     
         Q4Q4I6_LEIMA   265 HKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLS 669
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh........eeeeeee.....eeeeeee......----.......eeeee..eeee..hhhhhhhhhh..eeeeee....-----hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh............hhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhh.ee..eeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee........eeee......hhhhhhhhhhh--------.......eeee...hhhhhhhhhhhhh.-.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hjc A   1 HKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPF----PNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLP-----ENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQ--------QYMMSKKTMELNPRHPIIKELRRRVGAD-NDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLS 405
                                    10        20        30        40        50      |  - |      70        80        90       100  |    110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    |    -   |   340       350       360| |    370       380       390       400     
                                                                                   57   62                                      103   109                                                                                                                                                                                                                     325      334                        361 |                                          
                                                                                                                                                                                                                                                                                                                                                                                                    363
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HJC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HJC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HJC)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q4Q4I6_LEIMA | Q4Q4I6)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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        Q4Q4I6_LEIMA | Q4Q4I6: 3h80 3q5j 3q5k 3q5l 3u67

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