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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF HSP90 FROM LEISHMANIA MAJOR, LMJF33.0312:M1-K213
 
Authors :  A. K. Wernimont, W. Tempel, Y. H. Lin, A. Hutchinson, F. Mackenzie, A. Fa I. Kozieradzki, D. Cossar, Y. Zhao, M. Schapira, A. Bochkarev, C. H. Ar C. Bountra, J. Weigelt, A. M. Edwards, M. A. J. Ferguson, R. Hui, J. C. Pi T. Hills, Structural Genomics Consortium (Sgc)
Date :  28 Apr 09  (Deposition) - 26 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Sleeping Sickness, Leishmania, Heat Shock Protein, Structural Genomics, Stress Response Protein, Chaperone, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, W. Tempel, Y. H. Lin, A. Hutchinson, F. Mackenzie, A. Fairlamb, I. Kozieradzki, D. Cossar, Y. Zhao, M. Schapira, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, M. A. J. Ferguson, R. Hui, J. C. Pizarro, T. Hills
Crystal Structure Of The Amino-Terminal Domain Of Hsp90 Fro Leishmania Major, Lmjf33. 0312:M1-K213
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 83-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-213
    Gene: LMJF33.0312, LMJF33.0314, LMJF33.0316, LMJF33.0320, LMJF33.0323, LMJF33.0326, LMJF33.0333, LMJF33.0336, LMJF33.0340, LMJF33.0343, LMJF33.0346, LMJF33.0350, LMJF33.0355, LMJF33.0360, LMJF33.0365
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 347515
    Strain: FRIEDLIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2EDO7Ligand/Ion1,2-ETHANEDIOL
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2EDO14Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:36 , ANP A:223 , HOH A:300 , HOH A:301BINDING SITE FOR RESIDUE MG A 214
02AC2SOFTWAREMET A:83 , ASP A:87 , ASN A:91 , ANP A:223 , HOH A:305BINDING SITE FOR RESIDUE EDO A 215
03AC3SOFTWAREASN A:90 , THR A:94 , ILE A:95 , HOH A:334BINDING SITE FOR RESIDUE EDO A 216
04AC4SOFTWAREPRO A:59 , LEU A:61 , HOH A:348BINDING SITE FOR RESIDUE EDO A 217
05AC5SOFTWARECYS A:62 , ARG A:64 , GLU A:77 , ASN A:79BINDING SITE FOR RESIDUE EDO A 218
06AC6SOFTWAREASN A:90BINDING SITE FOR RESIDUE EDO A 219
07AC7SOFTWARESER A:144 , THR A:158 , THR A:160 , SER A:163 , MG A:222BINDING SITE FOR RESIDUE EDO A 220
08AC8SOFTWAREASP A:164 , LYS A:166 , GLY A:168 , ARG A:170 , HOH A:319BINDING SITE FOR RESIDUE EDO A 221
09AC9SOFTWAREGLU A:143 , SER A:144 , SER A:159 , THR A:160 , SER A:163 , EDO A:220BINDING SITE FOR RESIDUE MG A 222
10BC1SOFTWAREASN A:36 , ALA A:40 , ASP A:78 , MET A:83 , ASN A:91 , GLY A:117 , GLY A:120 , VAL A:121 , GLY A:122 , PHE A:123 , THR A:169 , MG A:214 , EDO A:215 , HOH A:224 , HOH A:233 , HOH A:252 , HOH A:300 , HOH A:301 , HOH A:302 , HOH A:306 , HOH A:329BINDING SITE FOR RESIDUE ANP A 223

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H80)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3H80)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H80)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H80)

(-) Exons   (0, 0)

(no "Exon" information available for 3H80)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
 aligned with Q4Q4I6_LEIMA | Q4Q4I6 from UniProtKB/TrEMBL  Length:701

    Alignment length:214
                                  1                                                                                                                                                                                                               
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
         Q4Q4I6_LEIMA     - ------MTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
               SCOP domains d3h80a_ A: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains 3h80A00 A:-5-208  [code=3.30.565.10, no name defined]                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee....eeeeee.....hhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhheeeeeeeee......eeeee....eeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhhhhh.....eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h80 A  -5 NLYFQGMTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVE 208
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H80)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q4Q4I6_LEIMA | Q4Q4I6)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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        Q4Q4I6_LEIMA | Q4Q4I6: 3hjc 3q5j 3q5k 3q5l 3u67

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