Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF ALPHA-GALACTOSIDASE A AT PH 4.5 COMPLEXED WITH 1-DEOXYGALACTONIJIRIMYCIN
 
Authors :  R. L. Lieberman
Date :  02 Apr 09  (Deposition) - 26 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Disease Mutation, Disulfide Bond, Glycoprotein, Glycosidase, Lysosome, Rna Editing (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. L. Lieberman, J. A. D'Aquino, D. Ringe, G. A. Petsko
Effects Of Ph And Iminosugar Pharmacological Chaperones On Lysosomal Glycosidase Structure And Stability.
Biochemistry V. 48 4816 2009
PubMed-ID: 19374450  |  Reference-DOI: 10.1021/BI9002265

(-) Compounds

Molecule 1 - ALPHA-GALACTOSIDASE A
    ChainsA, B
    EC Number3.2.1.22
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System CommonCHINESE HAMSTER
    Expression System Taxid10029
    GeneGLA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALPHA-D-GALACTOSIDE GALACTOHYDROLASE, ALPHA-D-GALACTOSIDASE A, MELIBIASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 23)

Asymmetric/Biological Unit (4, 23)
No.NameCountTypeFull Name
1MAN5Ligand/IonALPHA-D-MANNOSE
2NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
3NOJ2Ligand/Ion1-DEOXYNOJIRIMYCIN
4SO45Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:139 , PHE A:149 , TYR A:173 , CYS A:174 , ASP A:175 , HOH A:431 , NAG A:640BINDING SITE FOR RESIDUE NAG A 639
02AC2SOFTWAREASP A:175 , NAG A:639BINDING SITE FOR RESIDUE NAG A 640
03AC3SOFTWAREASP A:33 , ASN A:192 , GLY A:195 , NAG A:693 , PRO B:210BINDING SITE FOR RESIDUE NAG A 692
04AC4SOFTWAREASP A:33 , NAG A:692 , MAN A:694BINDING SITE FOR RESIDUE NAG A 693
05AC5SOFTWARENAG A:693 , MAN A:696BINDING SITE FOR RESIDUE MAN A 694
06AC6SOFTWAREHOH A:438 , MAN A:694BINDING SITE FOR RESIDUE MAN A 696
07AC7SOFTWAREASN A:215 , THR A:217 , GLN A:221 , HOH A:437 , NAG A:716BINDING SITE FOR RESIDUE NAG A 715
08AC8SOFTWAREHOH A:26 , HOH A:445 , HOH A:450 , NAG A:715BINDING SITE FOR RESIDUE NAG A 716
09AC9SOFTWARETRP A:236 , LYS A:237 , HOH A:432 , TRP B:236 , LYS B:237BINDING SITE FOR RESIDUE SO4 A 1
10BC1SOFTWAREHOH A:12 , ARG A:332 , ILE A:367 , ALA A:368 , SER A:371 , ARG A:402BINDING SITE FOR RESIDUE SO4 A 2
11BC2SOFTWAREARG A:196BINDING SITE FOR RESIDUE SO4 A 5
12BC3SOFTWAREASP A:92 , ASP A:93 , TYR A:134 , CYS A:142 , LYS A:168 , ASP A:170 , GLU A:203 , ARG A:227 , ASP A:231BINDING SITE FOR RESIDUE NOJ A 430
13BC4SOFTWAREASN B:139 , PHE B:149 , ASP B:175BINDING SITE FOR RESIDUE NAG B 639
14BC5SOFTWAREASP B:33 , ASN B:192 , GLY B:195 , NAG B:693BINDING SITE FOR RESIDUE NAG B 692
15BC6SOFTWAREASP B:33 , NAG B:692 , MAN B:694BINDING SITE FOR RESIDUE NAG B 693
16BC7SOFTWAREHOH B:442 , HOH B:445 , NAG B:693 , MAN B:695BINDING SITE FOR RESIDUE MAN B 694
17BC8SOFTWAREARG B:38 , HOH B:438 , MAN B:694BINDING SITE FOR RESIDUE MAN B 695
18BC9SOFTWAREHOH B:21 , ASN B:215 , THR B:217 , GLU B:218 , HOH B:434 , NAG B:716BINDING SITE FOR RESIDUE NAG B 715
19CC1SOFTWAREHOH B:441 , NAG B:715 , MAN B:717BINDING SITE FOR RESIDUE NAG B 716
20CC2SOFTWARENAG B:716BINDING SITE FOR RESIDUE MAN B 717
21CC3SOFTWAREARG B:332 , THR B:366 , ILE B:367 , ALA B:368 , ARG B:402BINDING SITE FOR RESIDUE SO4 B 3
22CC4SOFTWAREARG B:118 , HIS B:125 , ARG B:196BINDING SITE FOR RESIDUE SO4 B 4
23CC5SOFTWARETRP B:47 , ASP B:92 , ASP B:93 , TYR B:134 , CYS B:142 , LYS B:168 , ASP B:170 , GLU B:203 , ARG B:227 , ASP B:231BINDING SITE FOR RESIDUE NOJ B 1

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:52 -A:94
2A:56 -A:63
3A:142 -A:172
4A:202 -A:223
5A:378 -A:382
6B:52 -B:94
7B:56 -B:63
8B:142 -B:172
9B:202 -B:223
10B:378 -B:382

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Asn A:379 -Pro A:380
2Leu A:388 -Pro A:389
3Thr A:420 -Met A:421
4Asn B:379 -Pro B:380
5Leu B:388 -Pro B:389

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (210, 420)

Asymmetric/Biological Unit (210, 420)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_000431L32PAGAL_HUMANDisease (FD)  ---A/BL32P
002UniProtVAR_077369D33GAGAL_HUMANUnclassified (FD)869312136A/BD33G
003UniProtVAR_000432N34SAGAL_HUMANDisease (FD)28935192A/BN34S
004UniProtVAR_077370G35EAGAL_HUMANUnclassified (FD)869312137A/BG35E
005UniProtVAR_000433G35RAGAL_HUMANDisease (FD)  ---A/BG35R
006UniProtVAR_077371L36WAGAL_HUMANDisease (FD)869312138A/BL36W
007UniProtVAR_012364P40LAGAL_HUMANDisease (FD)  ---A/BP40L
008UniProtVAR_000434P40SAGAL_HUMANDisease (FD)104894831A/BP40S
009UniProtVAR_062551M42LAGAL_HUMANDisease (FD)797044613A/BM42L
010UniProtVAR_077372M42TAGAL_HUMANDisease (FD)398123201A/BM42T
011UniProtVAR_012365M42VAGAL_HUMANDisease (FD)  ---A/BM42V
012UniProtVAR_062552G43RAGAL_HUMANDisease (FD)  ---A/BG43R
013UniProtVAR_077373L45PAGAL_HUMANDisease (FD)  ---A/BL45P
014UniProtVAR_062553H46PAGAL_HUMANDisease (FD)  ---A/BH46P
015UniProtVAR_012367H46RAGAL_HUMANDisease (FD)398123203A/BH46R
016UniProtVAR_012368H46YAGAL_HUMANDisease (FD)  ---A/BH46Y
017UniProtVAR_012369W47GAGAL_HUMANDisease (FD)  ---A/BW47G
018UniProtVAR_076478W47RAGAL_HUMANDisease (FD)  ---A/BW47R
019UniProtVAR_077374E48DAGAL_HUMANDisease (FD)869312254A/BE48D
020UniProtVAR_000435R49LAGAL_HUMANDisease (FD)  ---A/BR49L
021UniProtVAR_012370R49PAGAL_HUMANDisease (FD)398123205A/BR49P
022UniProtVAR_012371R49SAGAL_HUMANDisease (FD)  ---A/BR49S
023UniProtVAR_000436C52RAGAL_HUMANDisease (FD)  ---A/BC52R
024UniProtVAR_000437C52SAGAL_HUMANDisease (FD)869312256A/BC52S
025UniProtVAR_000438C56FAGAL_HUMANDisease (FD)869312258A/BC56F
026UniProtVAR_000439C56GAGAL_HUMANDisease (FD)28935193A/BC56G
027UniProtVAR_012372C56YAGAL_HUMANDisease (FD)869312258A/BC56Y
028UniProtVAR_000440E59KAGAL_HUMANDisease (FD)  ---A/BE59K
029UniProtVAR_077375P60LAGAL_HUMANUnclassified (FD)869312262A/BP60L
030UniProtVAR_077376I64FAGAL_HUMANDisease (FD)869312139A/BI64F
031UniProtVAR_032290S65TAGAL_HUMANDisease (FD)104894848A/BS65T
032UniProtVAR_000441E66QAGAL_HUMANDisease (FD)28935191A/BE66Q
033UniProtVAR_077377E71GAGAL_HUMANPolymorphism781927744A/BE71G
034UniProtVAR_000442M72VAGAL_HUMANDisease (FD)  ---A/BM72V
035UniProtVAR_077378G80DAGAL_HUMANUnclassified (FD)781838005A/BG80D
036UniProtVAR_000443G85DAGAL_HUMANDisease (FD)  ---A/BG85D
037UniProtVAR_012373Y86CAGAL_HUMANDisease (FD)  ---A/BY86C
038UniProtVAR_077379Y86HAGAL_HUMANDisease (FD)869312140A/BY86H
039UniProtVAR_012374L89PAGAL_HUMANDisease (FD)  ---A/BL89P
040UniProtVAR_000444L89RAGAL_HUMANDisease (FD)  ---A/BL89R
041UniProtVAR_077380I91NAGAL_HUMANDisease (FD)869312141A/BI91N
042UniProtVAR_012375I91TAGAL_HUMANDisease (FD)869312141A/BI91T
043UniProtVAR_012376D92HAGAL_HUMANDisease (FD)  ---A/BD92H
044UniProtVAR_012377D92YAGAL_HUMANDisease (FD)  ---A/BD92Y
045UniProtVAR_012378D93GAGAL_HUMANDisease (FD)  ---A/BD93G
046UniProtVAR_062554D93NAGAL_HUMANDisease (FD)869312270A/BD93N
047UniProtVAR_012379C94SAGAL_HUMANDisease (FD)  ---A/BC94S
048UniProtVAR_012380C94YAGAL_HUMANDisease (FD)113173389A/BC94Y
049UniProtVAR_012381W95SAGAL_HUMANDisease (FD)  ---A/BW95S
050UniProtVAR_012382A97VAGAL_HUMANDisease (FD)  ---A/BA97V
051UniProtVAR_000445R100KAGAL_HUMANDisease (FD)869312273A/BR100K
052UniProtVAR_012383R100TAGAL_HUMANDisease (FD)  ---A/BR100T
053UniProtVAR_000447R112CAGAL_HUMANDisease (FD)104894834A/BR112C
054UniProtVAR_000448R112HAGAL_HUMANDisease (FD)372966991A/BR112H
055UniProtVAR_062555R112SAGAL_HUMANDisease (FD)  ---A/BR112S
056UniProtVAR_077381F113IAGAL_HUMANUnclassified (FD)869312142A/BF113I
057UniProtVAR_012384F113LAGAL_HUMANDisease (FD)869312142A/BF113L
058UniProtVAR_012385F113SAGAL_HUMANDisease (FD)  ---A/BF113S
059UniProtVAR_062556L120VAGAL_HUMANDisease (FD)  ---A/BL120V
060UniProtVAR_077382A121TAGAL_HUMANUnclassified (FD)782197638A/BA121T
061UniProtVAR_000450G128EAGAL_HUMANDisease (FD)  ---A/BG128E
062UniProtVAR_000451L131PAGAL_HUMANDisease (FD)869312298A/BL131P
063UniProtVAR_012386Y134SAGAL_HUMANDisease (FD)  ---A/BY134S
064UniProtVAR_062557A135VAGAL_HUMANDisease (FD)  ---A/BA135V
065UniProtVAR_012387G138RAGAL_HUMANDisease (FD)  ---A/BG138R
066UniProtVAR_012388C142RAGAL_HUMANDisease (FD)  ---A/BC142R
067UniProtVAR_000452C142YAGAL_HUMANDisease (FD)  ---A/BC142Y
068UniProtVAR_000453A143PAGAL_HUMANDisease (FD)104894845A/BA143P
069UniProtVAR_012389A143TAGAL_HUMANUnclassified (FD)104894845A/BA143T
070UniProtVAR_000454G144VAGAL_HUMANDisease (FD)  ---A/BG144V
071UniProtVAR_000455P146SAGAL_HUMANDisease (FD)28935194A/BP146S
072UniProtVAR_012390S148NAGAL_HUMANDisease (FD)  ---A/BS148N
073UniProtVAR_012391S148RAGAL_HUMANDisease (FD)  ---A/BS148R
074UniProtVAR_077383I154TAGAL_HUMANPolymorphism869312143A/BI154T
075UniProtVAR_000456A156TAGAL_HUMANDisease (FD)28935195A/BA156T
076UniProtVAR_000457A156VAGAL_HUMANDisease (FD)869312307A/BA156V
077UniProtVAR_012392W162CAGAL_HUMANDisease (FD)869312311A/BW162C
078UniProtVAR_000458W162RAGAL_HUMANDisease (FD)28935196A/BW162R
079UniProtVAR_012393G163VAGAL_HUMANDisease (FD)  ---A/BG163V
080UniProtVAR_077384V164GAGAL_HUMANDisease (FD)  ---A/BV164G
081UniProtVAR_077385V164LAGAL_HUMANUnclassified (FD)869312144A/BV164L
082UniProtVAR_000459D165VAGAL_HUMANDisease (FD)  ---A/BD165V
083UniProtVAR_000460L166VAGAL_HUMANDisease (FD)  ---A/BL166V
084UniProtVAR_077386L167QAGAL_HUMANDisease (FD)  ---A/BL167Q
085UniProtVAR_012394D170VAGAL_HUMANDisease (FD)  ---A/BD170V
086UniProtVAR_062558G171DAGAL_HUMANDisease (FD)  ---A/BG171D
087UniProtVAR_012395C172RAGAL_HUMANDisease (FD)  ---A/BC172R
088UniProtVAR_000461C172YAGAL_HUMANDisease (FD)869312318A/BC172Y
089UniProtVAR_077387L180FAGAL_HUMANUnclassified (FD)869312145A/BL180F
090UniProtVAR_012396G183DAGAL_HUMANDisease (FD)  ---A/BG183D
091UniProtVAR_077388M187IAGAL_HUMANDisease (FD)869312146A/BM187I
092UniProtVAR_012397M187VAGAL_HUMANDisease (FD)869312340A/BM187V
093UniProtVAR_077389R196SAGAL_HUMANUnclassified (FD)869312147A/BR196S
094UniProtVAR_077390I198TAGAL_HUMANUnclassified (FD)727503950A/BI198T
095UniProtVAR_062559S201FAGAL_HUMANDisease (FD)  ---A/BS201F
096UniProtVAR_000462C202WAGAL_HUMANDisease (FD)28936082A/BC202W
097UniProtVAR_012398C202YAGAL_HUMANDisease (FD)869312344A/BC202Y
098UniProtVAR_077391W204RAGAL_HUMANDisease (FD)869312148A/BW204R
099UniProtVAR_000463P205TAGAL_HUMANDisease (FD)397515870A/BP205T
100UniProtVAR_077392K213RAGAL_HUMANUnclassified (FD)869312149A/BK213R
101UniProtVAR_077393P214LAGAL_HUMANUnclassified (FD)869312150A/BP214L
102UniProtVAR_000464N215SAGAL_HUMANDisease (FD)28935197A/BN215S
103UniProtVAR_012400Y216DAGAL_HUMANDisease (FD)  ---A/BY216D
104UniProtVAR_077394I219MAGAL_HUMANUnclassified (FD)869312151A/BI219M
105UniProtVAR_000465I219NAGAL_HUMANDisease (FD)  ---A/BI219N
106UniProtVAR_062560I219TAGAL_HUMANDisease (FD)  ---A/BI219T
107UniProtVAR_012401C223GAGAL_HUMANDisease (FD)869312381A/BC223G
108UniProtVAR_000466N224DAGAL_HUMANDisease (FD)  ---A/BN224D
109UniProtVAR_012402N224SAGAL_HUMANDisease (FD)869312383A/BN224S
110UniProtVAR_012403W226RAGAL_HUMANDisease (FD)  ---A/BW226R
111UniProtVAR_077395R227PAGAL_HUMANDisease (FD)  ---A/BR227P
112UniProtVAR_000467R227QAGAL_HUMANDisease (FD)28935198A/BR227Q
113UniProtVAR_077396N228SAGAL_HUMANUnclassified (FD)869312152A/BN228S
114UniProtVAR_012404A230TAGAL_HUMANDisease (FD)  ---A/BA230T
115UniProtVAR_000468D231NAGAL_HUMANDisease (FD)  ---A/BD231N
116UniProtVAR_062561D234EAGAL_HUMANDisease (FD)  ---A/BD234E
117UniProtVAR_012405S235CAGAL_HUMANDisease (FD)797044746A/BS235C
118UniProtVAR_012406W236CAGAL_HUMANDisease (FD)869312386A/BW236C
119UniProtVAR_012407W236LAGAL_HUMANDisease (FD)  ---A/BW236L
120UniProtVAR_012408I242NAGAL_HUMANDisease (FD)  ---A/BI242N
121UniProtVAR_077397I242VAGAL_HUMANUnclassified (FD)  ---A/BI242V
122UniProtVAR_077398L243FAGAL_HUMANUnclassified (FD)397515874A/BL243F
123UniProtVAR_012409D244HAGAL_HUMANDisease (FD)  ---A/BD244H
124UniProtVAR_000469D244NAGAL_HUMANDisease (FD)727503948A/BD244N
125UniProtVAR_077399S247PAGAL_HUMANDisease (FD)869312393A/BS247P
126UniProtVAR_077400N249KAGAL_HUMANUnclassified (FD)  ---A/BN249K
127UniProtVAR_077401I253TAGAL_HUMANUnclassified (FD)727505292A/BI253T
128UniProtVAR_077402V254AAGAL_HUMANUnclassified (FD)869312153A/BV254A
129UniProtVAR_012410G258RAGAL_HUMANDisease (FD)  ---A/BG258R
130UniProtVAR_012411P259LAGAL_HUMANDisease (FD)869312399A/BP259L
131UniProtVAR_012412P259RAGAL_HUMANDisease (FD)869312399A/BP259R
132UniProtVAR_012413G260AAGAL_HUMANDisease (FD)  ---A/BG260A
133UniProtVAR_012414G261DAGAL_HUMANDisease (FD)  ---A/BG261D
134UniProtVAR_077403W262RAGAL_HUMANDisease (FD)869312154A/BW262R
135UniProtVAR_012415N263SAGAL_HUMANDisease (FD)869312404A/BN263S
136UniProtVAR_000471D264VAGAL_HUMANDisease (FD)28935486A/BD264V
137UniProtVAR_062562D264YAGAL_HUMANDisease (FD)190347120A/BD264Y
138UniProtVAR_012416P265RAGAL_HUMANDisease (FD)  ---A/BP265R
139UniProtVAR_032291D266HAGAL_HUMANDisease (FD)  ---A/BD266H
140UniProtVAR_012418D266NAGAL_HUMANDisease (FD)869312407A/BD266N
141UniProtVAR_000472D266VAGAL_HUMANDisease (FD)28935487A/BD266V
142UniProtVAR_012419M267IAGAL_HUMANDisease (FD)730880451A/BM267I
143UniProtVAR_000473V269AAGAL_HUMANDisease (FD)28935488A/BV269A
144UniProtVAR_077404V269GAGAL_HUMANDisease (FD)  ---A/BV269G
145UniProtVAR_000474N272KAGAL_HUMANDisease (FD)  ---A/BN272K
146UniProtVAR_032292N272SAGAL_HUMANDisease (FD)28935495A/BN272S
147UniProtVAR_062563S276GAGAL_HUMANDisease (FD)869312432A/BS276G
148UniProtVAR_000475Q279EAGAL_HUMANDisease (FD)28935485A/BQ279E
149UniProtVAR_012420Q279HAGAL_HUMANDisease (FD)  ---A/BQ279H
150UniProtVAR_012421Q280HAGAL_HUMANDisease (FD)  ---A/BQ280H
151UniProtVAR_000476M284TAGAL_HUMANDisease (FD)  ---A/BM284T
152UniProtVAR_062564A285PAGAL_HUMANDisease (FD)  ---A/BA285P
153UniProtVAR_012422W287CAGAL_HUMANDisease (FD)  ---A/BW287C
154UniProtVAR_012423W287GAGAL_HUMANDisease (FD)  ---A/BW287G
155UniProtVAR_000477A288DAGAL_HUMANDisease (FD)869312437A/BA288D
156UniProtVAR_012424I289FAGAL_HUMANDisease (FD)  ---A/BI289F
157UniProtVAR_077405I289VAGAL_HUMANPolymorphism140329381A/BI289V
158UniProtVAR_012425M296IAGAL_HUMANDisease (FD)104894846A/BM296I
159UniProtVAR_000478M296VAGAL_HUMANDisease (FD)104894830A/BM296V
160UniProtVAR_000479S297FAGAL_HUMANDisease (FD)28935489A/BS297F
161UniProtVAR_012426N298HAGAL_HUMANDisease (FD)  ---A/BN298H
162UniProtVAR_000480N298KAGAL_HUMANDisease (FD)  ---A/BN298K
163UniProtVAR_012427N298SAGAL_HUMANDisease (FD)  ---A/BN298S
164UniProtVAR_062565L300FAGAL_HUMANDisease (FD)  ---A/BL300F
165UniProtVAR_000481R301QAGAL_HUMANDisease (FD)104894828A/BR301Q
166UniProtVAR_077406A309VAGAL_HUMANUnclassified (FD)869312155A/BA309V
167UniProtVAR_077407D313NAGAL_HUMANPolymorphism  ---A/BD313N
168UniProtVAR_000482D313YAGAL_HUMANDisease (FD)28935490A/BD313Y
169UniProtVAR_077408D315NAGAL_HUMANUnclassified (FD)869312156A/BD315N
170UniProtVAR_077409V316AAGAL_HUMANUnclassified (FD)869312157A/BV316A
171UniProtVAR_000483V316EAGAL_HUMANDisease (FD)  ---A/BV316E
172UniProtVAR_077410I317SAGAL_HUMANDisease (FD)869312158A/BI317S
173UniProtVAR_012430N320KAGAL_HUMANDisease (FD)  ---A/BN320K
174UniProtVAR_012431N320YAGAL_HUMANDisease (FD)  ---A/BN320Y
175UniProtVAR_012432Q321EAGAL_HUMANDisease (FD)730880439A/BQ321E
176UniProtVAR_077411P323RAGAL_HUMANUnclassified (FD)869312159A/BP323R
177UniProtVAR_000484Q327KAGAL_HUMANDisease (FD)28935491A/BQ327K
178UniProtVAR_077412Q327LAGAL_HUMANDisease (FD)869312160A/BQ327L
179UniProtVAR_077413Q327RAGAL_HUMANDisease (FD)869312160A/BQ327R
180UniProtVAR_000486G328AAGAL_HUMANDisease (FD)28935492A/BG328A
181UniProtVAR_000485G328RAGAL_HUMANDisease (FD)104894832A/BG328R
182UniProtVAR_062566G328VAGAL_HUMANDisease (FD)  ---A/BG328V
183UniProtVAR_077414Q330RAGAL_HUMANUnclassified (FD)869312161A/BQ330R
184UniProtVAR_062567E338KAGAL_HUMANDisease (FD)  ---A/BE338K
185UniProtVAR_012433W340RAGAL_HUMANDisease (FD)  ---A/BW340R
186UniProtVAR_012434E341KAGAL_HUMANDisease (FD)869312214A/BE341K
187UniProtVAR_077415R342PAGAL_HUMANDisease (FD)  ---A/BR342P
188UniProtVAR_000487R342QAGAL_HUMANDisease (FD)28935493A/BR342Q
189UniProtVAR_077416A352GAGAL_HUMANUnclassified (FD)869312162A/BA352G
190UniProtVAR_077417R356PAGAL_HUMANDisease (FD)869312163A/BR356P
191UniProtVAR_062568R356QAGAL_HUMANDisease (FD)869312163A/BR356Q
192UniProtVAR_000488R356WAGAL_HUMANDisease (FD)104894827A/BR356W
193UniProtVAR_062569E358AAGAL_HUMANDisease (FD)  ---A/BE358A
194UniProtVAR_000489E358KAGAL_HUMANDisease (FD)797044774A/BE358K
195UniProtVAR_062570G360CAGAL_HUMANDisease (FD)782598150A/BG360C
196UniProtVAR_077418G360SAGAL_HUMANDisease (FD)  ---A/BG360S
197UniProtVAR_000491G361RAGAL_HUMANDisease (FD)28935494A/BG361R
198UniProtVAR_012435R363HAGAL_HUMANDisease (FD)111422676A/BR363H
199UniProtVAR_012436G373DAGAL_HUMANDisease (FD)869312227A/BG373D
200UniProtVAR_012437G373SAGAL_HUMANDisease (FD)727504348A/BG373S
201UniProtVAR_077419G375AAGAL_HUMANUnclassified (FD)869312164A/BG375A
202UniProtVAR_012438A377DAGAL_HUMANDisease (FD)  ---A/BA377D
203UniProtVAR_012439C378YAGAL_HUMANDisease (FD)  ---A/BC378Y
204UniProtVAR_077420R392SAGAL_HUMANUnclassified (FD)869312165A/BR392S
205UniProtVAR_000493F396YAGAL_HUMANUnclassified  ---A/BF396Y
206UniProtVAR_077421W399SAGAL_HUMANUnclassified (FD)782449839A/BW399S
207UniProtVAR_012440P409AAGAL_HUMANDisease (FD)  ---A/BP409A
208UniProtVAR_012441P409TAGAL_HUMANDisease (FD)  ---A/BP409T
209UniProtVAR_032293T410AAGAL_HUMANDisease (FD)104894852A/BT410A
210UniProtVAR_062571L414SAGAL_HUMANDisease (FD)  ---A/BL414S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALPHA_GALACTOSIDASEPS00512 Alpha-galactosidase signature.AGAL_HUMAN85-101
 
  2A:85-101
B:85-101

(-) Exons   (7, 14)

Asymmetric/Biological Unit (7, 14)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002185161aENSE00000674005X:100662913-100662698216AGAL_HUMAN1-65652A:32-65
B:32-65
34
34
1.2ENST000002185162ENSE00000674004X:100658973-100658799175AGAL_HUMAN65-123592A:65-123
B:65-123
59
59
1.3bENST000002185163bENSE00000674003X:100656797-100656620178AGAL_HUMAN124-183602A:124-183
B:124-183
60
60
1.5bENST000002185165bENSE00000674002X:100655745-10065565492AGAL_HUMAN183-213312A:183-213
B:183-213
31
31
1.7cENST000002185167cENSE00000674001X:100653934-100653773162AGAL_HUMAN214-267542A:214-267
B:214-267
54
54
1.7fENST000002185167fENSE00000673999X:100653555-100653358198AGAL_HUMAN268-333662A:268-333
B:268-333
66
66
1.8bENST000002185168bENSE00001826038X:100653087-100652791297AGAL_HUMAN334-429962A:334-421
B:334-422
88
89

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:390
 aligned with AGAL_HUMAN | P06280 from UniProtKB/Swiss-Prot  Length:429

    Alignment length:390
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421
           AGAL_HUMAN    32 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENTM 421
               SCOP domains d3gxta1 A:32-323 Melibiase                                                                                                                                                                                                                                                                          d3gxta2 A:324-421 Melibiase                                                                        SCOP domains
               CATH domains 3gxtA01 A:32-324 Aldolase class I                                                                                                                                                                                                                                                                    3gxtA02 A:325-421 Golgi alpha-mannosidase II                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeehhhhhh.......hhhhh.hhhhhhhhhhhhhhhhhhhhh..eee........................hhhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhh...eeeehhhhhhh.....hhhhhhh...eee.......hhhhhhhhhhhhhhhhhhhh.......eee...........hhhhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhhh.......eeeeee..eeeeeee....eeeeeeee.......ee..ee.hhhhhhh....eeeeeeee...eeeeeee...ee..ee....eeeeeeee.. Sec.struct. author
             SAPs(SNPs) (1) PGSEW---L-LR-PPGDL--R---F--KL---FTQ----GV-------D----DC--P-NHGSS-V--K-----------CI------VT------E--P--SV--R---RPV-S-N-----T-T-----CVGVVQ--VDR-------F--D---I--------S-T--FW-RT-------RLSD--M---GD-RPS-TN--ECC-----NFH--P-K---TA---RLADRSVRHI-A--K---G--EH---TP-CDF------IFH-FQ-------V---N-NAS--KE-R---KA-R-------K-RKP---------G---P-A-CR-H---------D-A-DY-------------S---Y--S---------AA---S------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---R----S-T---RR-P--S---G-----------------------------H--R-TYNY-----T-----------HL----------------------------YT----R-------V-----R-L-------Y--------------V--------------Y----------------N----S--Q--------L-----V-N--------------R----Y-N--G--S------H-------G-V------V-K--------------Y--E---Y------LR-------------Q-------------Q-K-S------------S-----------------------------------T------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------V---Y--S------Y-------------------------------------------------------SS---------------------------------------------------------------------------------------------------------T----------------------------------------------V-------------------------------S----------------------------RV---------------------------W----------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE -----------------------------------------------------ALPHA_GALACTOSIDA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:32-65           ----------------------------------------------------------Exon 1.3b  PDB: A:124-183 UniProt: 124-183                  ------------------------------Exon 1.7c  PDB: A:214-267 UniProt: 214-267            Exon 1.7f  PDB: A:268-333 UniProt: 268-333                        Exon 1.8b  PDB: A:334-421 UniProt: 334-429 [INCOMPLETE]                                  Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.2  PDB: A:65-123 UniProt: 65-123                    -----------------------------------------------------------Exon 1.5b  PDB: A:183-213      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3gxt A  32 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENTM 421
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421

Chain B from PDB  Type:PROTEIN  Length:391
 aligned with AGAL_HUMAN | P06280 from UniProtKB/Swiss-Prot  Length:429

    Alignment length:391
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
           AGAL_HUMAN    32 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENTMQ 422
               SCOP domains d3gxtb1 B:32-323 Melibiase                                                                                                                                                                                                                                                                          d3gxtb2 B:324-422 Melibiase                                                                         SCOP domains
               CATH domains 3gxtB01 B:32-324 Aldolase class I                                                                                                                                                                                                                                                                    3gxtB02 B:325-422 Golgi alpha-mannosidase II                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeehhhhhh.......hhhhh.hhhhhhhhhhhhhhhhhhhhh..eee........................hhhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhh...eeeehhhhhhh.....hhhhhhh...eee.......hhhhhhhhhhhhhhhhhhhh.......eee...........hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhhhh.......eeeeee..eeeeeee.....eeeeeee.......eeeeee.hhhhhhh....eeeeeeee...eeeeeee...eeeeee....eeeeeeee... Sec.struct. author
             SAPs(SNPs) (1) PGSEW---L-LR-PPGDL--R---F--KL---FTQ----GV-------D----DC--P-NHGSS-V--K-----------CI------VT------E--P--SV--R---RPV-S-N-----T-T-----CVGVVQ--VDR-------F--D---I--------S-T--FW-RT-------RLSD--M---GD-RPS-TN--ECC-----NFH--P-K---TA---RLADRSVRHI-A--K---G--EH---TP-CDF------IFH-FQ-------V---N-NAS--KE-R---KA-R-------K-RKP---------G---P-A-CR-H---------D-A-DY-------------S---Y--S---------AA---S-------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---R----S-T---RR-P--S---G-----------------------------H--R-TYNY-----T-----------HL----------------------------YT----R-------V-----R-L-------Y--------------V--------------Y----------------N----S--Q--------L-----V-N--------------R----Y-N--G--S------H-------G-V------V-K--------------Y--E---Y------LR-------------Q-------------Q-K-S------------S-----------------------------------T------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------V---Y--S------Y-------------------------------------------------------SS---------------------------------------------------------------------------------------------------------T----------------------------------------------V-------------------------------S----------------------------RV---------------------------W------------------------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE -----------------------------------------------------ALPHA_GALACTOSIDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: B:32-65           ----------------------------------------------------------Exon 1.3b  PDB: B:124-183 UniProt: 124-183                  ------------------------------Exon 1.7c  PDB: B:214-267 UniProt: 214-267            Exon 1.7f  PDB: B:268-333 UniProt: 268-333                        Exon 1.8b  PDB: B:334-422 UniProt: 334-429 [INCOMPLETE]                                   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.2  PDB: B:65-123 UniProt: 65-123                    -----------------------------------------------------------Exon 1.5b  PDB: B:183-213      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3gxt B  32 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENTMQ 422
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GXT)

(-) Gene Ontology  (24, 24)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (AGAL_HUMAN | P06280)
molecular function
    GO:0004557    alpha-galactosidase activity    Catalysis of the hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactohydrolase.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016936    galactoside binding    Interacting selectively and non-covalently with any glycoside in which the sugar group is galactose.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0052692    raffinose alpha-galactosidase activity    Catalysis of the reaction: raffinose + H2O = alpha-D-galactose + sucrose.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0046479    glycosphingolipid catabolic process    The chemical reactions and pathways resulting in the breakdown of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide.
    GO:0006687    glycosphingolipid metabolic process    The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide.
    GO:0046477    glycosylceramide catabolic process    The chemical reactions and pathways resulting in the breakdown of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0045019    negative regulation of nitric oxide biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
    GO:0051001    negative regulation of nitric-oxide synthase activity    Any process that stops or reduces the activity of the enzyme nitric-oxide synthase.
    GO:0009311    oligosaccharide metabolic process    The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0043202    lysosomal lumen    The volume enclosed within the lysosomal membrane.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NOJ  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn A:379 - Pro A:380   [ RasMol ]  
    Asn B:379 - Pro B:380   [ RasMol ]  
    Leu A:388 - Pro A:389   [ RasMol ]  
    Leu B:388 - Pro B:389   [ RasMol ]  
    Thr A:420 - Met A:421   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3gxt
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  AGAL_HUMAN | P06280
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.2.1.22
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  301500
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  AGAL_HUMAN | P06280
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AGAL_HUMAN | P062801r46 1r47 3gxn 3gxp 3hg2 3hg3 3hg4 3hg5 3lx9 3lxa 3lxb 3lxc 3s5y 3s5z 3tv8 4nxs

(-) Related Entries Specified in the PDB File

3gxn STRUCTURE OF APO ALPHA-GALACTOSIDASE A AT PH 4.5
3gxp STRUCTURE OF ACID-ALPHA-GALACTOSIDASE A COMPLEXED WITH GALACTOSE AT PH 4.5