3FO6 - JenaLib

Title :   CRYSTAL STRUCTURE OF GUANINE RIBOSWITCH BOUND TO 6-O-METHYLGUANINE

Authors :   S. D. Gilbert, F. E. Reyes, R. T. Batey

Date :   28 Dec 08 (Deposition) - 23 Jun 09 (Release) - 23 Jun 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A

Keywords :   Riboswitch, Mrna, Guanine, 6-O-Methylguanine, Rna-Ligand Complex, Double Helix, Three-Way Junction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. D. Gilbert, F. E. Reyes, A. L. Edwards, R. T. Batey
Adaptive Ligand Binding By The Purine Riboswitch In The Recognition Of Guanine And Adenine Analogs.
Structure V. 17 857 2009
PubMed-ID: 19523903 | Reference-DOI: 10.1016/J.STR.2009.04.009
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	A A:21 , U A:22 , U A:47 , U A:51 , A A:52 , A A:73 , C A:74 , U A:75	BINDING SITE FOR RESIDUE 6GO A 91
02	AC2	SOFTWARE	G A:32 , A A:33 , G A:38 , C A:39 , HOH A:310	BINDING SITE FOR RESIDUE ACT A 96
03	AC3	SOFTWARE	G A:29 , U A:30 , A A:66 , U A:67 , HOH A:351 , HOH A:359 , HOH A:386 , HOH A:497 , HOH A:518	BINDING SITE FOR RESIDUE NCO A 101
04	AC4	SOFTWARE	G A:38 , C A:39 , G A:56 , G A:57 , C A:58 , HOH A:347 , HOH A:381 , HOH A:421 , HOH A:452 , HOH A:470	BINDING SITE FOR RESIDUE NCO A 102
05	AC5	SOFTWARE	C A:39 , G A:55 , G A:56 , G A:57 , G A:68 , U A:69 , HOH A:315 , HOH A:401 , HOH A:442 , HOH A:457 , HOH A:462	BINDING SITE FOR RESIDUE NCO A 103
06	AC6	SOFTWARE	U A:30 , G A:31 , G A:32 , A A:65 , A A:66 , HOH A:303 , HOH A:310 , HOH A:345 , HOH A:349	BINDING SITE FOR RESIDUE NCO A 104
07	AC7	SOFTWARE	G A:37 , G A:38 , G A:57 , HOH A:342 , HOH A:356 , HOH A:360 , HOH A:371 , HOH A:399 , HOH A:424 , HOH A:436 , HOH A:495 , HOH A:499 , HOH A:512	BINDING SITE FOR RESIDUE NCO A 105
08	AC8	SOFTWARE	C A:41 , G A:42 , C A:53 , C A:54 , HOH A:340	BINDING SITE FOR RESIDUE NCO A 107
09	AC9	SOFTWARE	G A:46 , U A:47 , HOH A:420	BINDING SITE FOR RESIDUE NCO A 108
10	BC1	SOFTWARE	A A:24 , C A:71 , HOH A:387 , HOH A:404	BINDING SITE FOR RESIDUE NCO A 109
11	BC2	SOFTWARE	U A:36 , G A:42 , C A:43 , G A:72 , A A:73 , HOH A:493	BINDING SITE FOR RESIDUE NCO A 112

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:67
                                                                                                  
                  3fo6 A 15 GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC 81
                                    24        34        44        54        64        74

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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