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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF TRIPEPTIDYL PEPTIDASE -I
 
Authors :  A. Pal, R. Kraetzner, M. Grapp, T. Gruene, K. Schreiber, M. Granborg, H. A. R. Asif, S. Becker, J. Gartner, G. M. Sheldrick, R. Steinfeld
Date :  04 Sep 08  (Deposition) - 25 Nov 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Tripepetidyl Peptidase -I, Disease Mutation, Epilepsy, Glycoprotein, Hydrolase, Lysosome, Neuronal Ceroid Lipofuscinosis, Protease, Serine Protease, Zymogen (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Pal, R. Kraetzner, T. Gruene, M. Grapp, K. Schreiber, M. Gronborg, H. Urlaub, S. Becker, A. R. Asif, J. Gartner, G. M. Sheldrick, R. Steinfeld
Structure Of Tripeptidyl-Peptidase I Provides Insight Into The Molecular Basis Of Late Infantile Neuronal Ceroid Lipofuscinosis
J. Biol. Chem. V. 284 3976 2009
PubMed-ID: 19038966  |  Reference-DOI: 10.1074/JBC.M806947200

(-) Compounds

Molecule 1 - TRIPEPTIDYL-PEPTIDASE 1
    ChainsA, B
    EC Number3.4.14.9
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System CommonHUMAN
    Expression System StrainHEK 293 CELL LINE
    Expression System Taxid9606
    Expression System Vector TypePLAMID
    GeneCLN2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTPP-1, TRIPEPTIDYL-PEPTIDASE I, TPP-I, TRIPEPTIDYL AMINOPEPTIDASE, LYSOSOMAL PEPSTATIN-INSENSITIVE PROTEASE, LPIC, CELL GROWTH-INHIBITING GENE 1 PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)AB
Biological Unit 2 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 22)

Asymmetric Unit (5, 22)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
3NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO42Ligand/IonSULFATE ION
5ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO42Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NAG16Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO44Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:208 , ASN A:210 , ASN A:552BINDING SITE FOR RESIDUE NAG A 572
02AC2SOFTWAREGLY A:217 , ASN A:286BINDING SITE FOR RESIDUE NAG A 573
03AC3SOFTWARESER A:113 , ASN A:313BINDING SITE FOR RESIDUE NAG A 574
04AC4SOFTWAREASN A:414 , ASN A:443 , SER A:445BINDING SITE FOR RESIDUE NAG A 575
05AC5SOFTWAREHIS A:197 , ASP A:457 , GLU B:529BINDING SITE FOR RESIDUE ZN A 576
06AC6SOFTWAREGLU A:137 , HIS A:155BINDING SITE FOR RESIDUE ZN A 577
07AC7SOFTWAREGLU A:45 , HIS A:140 , HIS A:149 , GLU B:147BINDING SITE FOR RESIDUE ZN A 578
08AC8SOFTWAREGLU A:424 , HIS A:511BINDING SITE FOR RESIDUE ZN A 579
09AC9SOFTWAREARG A:497 , ARG A:506 , PRO A:563 , ARG A:564BINDING SITE FOR RESIDUE CL A 580
10BC1SOFTWAREASP A:517 , VAL A:518 , GLY A:539 , GLY A:541 , ASP A:543 , HOH A:609BINDING SITE FOR RESIDUE CA A 581
11BC2SOFTWAREARG A:375BINDING SITE FOR RESIDUE SO4 A 582
12BC3SOFTWAREARG B:208 , ASN B:210 , PHE B:516 , ASN B:552BINDING SITE FOR RESIDUE NAG B 572
13BC4SOFTWAREGLY B:217 , ASN B:286BINDING SITE FOR RESIDUE NAG B 573
14BC5SOFTWARESER B:113 , ASN B:313BINDING SITE FOR RESIDUE NAG B 574
15BC6SOFTWAREASN B:414 , ASN B:443BINDING SITE FOR RESIDUE NAG B 575
16BC7SOFTWAREGLU B:137 , HIS B:155BINDING SITE FOR RESIDUE ZN B 576
17BC8SOFTWAREGLU A:529 , HIS B:197 , ASP B:457BINDING SITE FOR RESIDUE ZN B 577
18BC9SOFTWAREGLU A:147 , GLU B:45 , HIS B:140 , HIS B:149BINDING SITE FOR RESIDUE ZN B 578
19CC1SOFTWAREGLU B:424 , HIS B:511 , HOH B:645BINDING SITE FOR RESIDUE ZN B 579
20CC2SOFTWAREARG B:497 , ARG B:506 , PRO B:563 , ARG B:564BINDING SITE FOR RESIDUE CL B 580
21CC3SOFTWAREASP B:517 , VAL B:518 , GLY B:539 , PRO B:540 , GLY B:541 , ASP B:543 , HOH B:634BINDING SITE FOR RESIDUE CA B 581
22CC4SOFTWAREARG B:28 , ARG B:375BINDING SITE FOR RESIDUE SO4 B 582

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:111 -A:122
2A:365 -A:526
3A:522 -A:537
4B:111 -B:122
5B:365 -B:526
6B:522 -B:537

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3EE6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (40, 80)

Asymmetric Unit (40, 80)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_037572S62LTPP1_HUMANPolymorphism2734715A/BS62L
02UniProtVAR_066883S62TTPP1_HUMANDisease (CLN2)  ---A/BS62T
03UniProtVAR_009603G77RTPP1_HUMANDisease (CLN2)121908195A/BG77R
04UniProtVAR_009604Q100RTPP1_HUMANPolymorphism1800746A/BQ100R
05UniProtVAR_016790R127QTPP1_HUMANDisease (CLN2)121908204A/BR127Q
06UniProtVAR_016791S153PTPP1_HUMANDisease (CLN2)  ---A/BS153P
07UniProtVAR_005642R175HTPP1_HUMANPolymorphism764922748A/BR175H
08UniProtVAR_063640P202LTPP1_HUMANDisease (CLN2)121908205A/BP202L
09UniProtVAR_009605R206CTPP1_HUMANDisease (CLN2)28940573A/BR206C
10UniProtVAR_016792R206HTPP1_HUMANDisease (CLN2)121908209A/BR206H
11UniProtVAR_066884Y209HTPP1_HUMANDisease (CLN2)  ---A/BY209H
12UniProtVAR_066885R266QTPP1_HUMANDisease (CLN2)757953998A/BR266Q
13UniProtVAR_016793V277MTPP1_HUMANDisease (CLN2)121908207A/BV277M
14UniProtVAR_016794Q278PTPP1_HUMANDisease (CLN2)  ---A/BQ278P
15UniProtVAR_072749Q278RTPP1_HUMANDisease (CLN2)796053439A/BQ278R
16UniProtVAR_016795G284VTPP1_HUMANDisease (CLN2)119455957A/BG284V
17UniProtVAR_016796N286STPP1_HUMANDisease (CLN2)119455958A/BN286S
18UniProtVAR_009606I287NTPP1_HUMANDisease (CLN2)121908196A/BI287N
19UniProtVAR_066886R339QTPP1_HUMANDisease (CLN2)765380155A/BR339Q
20UniProtVAR_009607E343KTPP1_HUMANDisease (CLN2)121908197A/BE343K
21UniProtVAR_016797T353PTPP1_HUMANDisease (CLN2)121908206A/BT353P
22UniProtVAR_005643C365RTPP1_HUMANDisease (CLN2)119455953A/BC365R
23UniProtVAR_005644C365YTPP1_HUMANDisease (CLN2)119455954A/BC365Y
24UniProtVAR_066887S382RTPP1_HUMANDisease (CLN2)  ---A/BS382R
25UniProtVAR_009608V385DTPP1_HUMANDisease (CLN2)121908198A/BV385D
26UniProtVAR_009609G389ETPP1_HUMANDisease (CLN2)121908199A/BG389E
27UniProtVAR_009610Q422HTPP1_HUMANDisease (CLN2)121908200A/BQ422H
28UniProtVAR_016798K428NTPP1_HUMANDisease (CLN2)  ---A/BK428N
29UniProtVAR_005645R447HTPP1_HUMANDisease (CLN2)119455956A/BR447H
30UniProtVAR_066888A448VTPP1_HUMANDisease (CLN2)  ---A/BA448V
31UniProtVAR_009611A454ETPP1_HUMANDisease (CLN2)121908201A/BA454E
32UniProtVAR_070917V466GTPP1_HUMANDisease (SCAR7)398122959A/BV466G
33UniProtVAR_016799G473RTPP1_HUMANDisease (CLN2)121908203A/BG473R
34UniProtVAR_009612S475LTPP1_HUMANDisease (CLN2)121908202A/BS475L
35UniProtVAR_016800F481CTPP1_HUMANDisease (CLN2)  ---A/BF481C
36UniProtVAR_058435G482RTPP1_HUMANDisease (CLN2)121908208A/BG482R
37UniProtVAR_066889G501CTPP1_HUMANDisease (CLN2)  ---A/BG501C
38UniProtVAR_066890N504YTPP1_HUMANDisease (CLN2)  ---A/BN504Y
39UniProtVAR_063641P544STPP1_HUMANDisease (CLN2)121908210A/BP544S
40UniProtVAR_066891W548RTPP1_HUMANDisease (CLN2)  ---A/BW548R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (40, 80)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_037572S62LTPP1_HUMANPolymorphism2734715A/BS62L
02UniProtVAR_066883S62TTPP1_HUMANDisease (CLN2)  ---A/BS62T
03UniProtVAR_009603G77RTPP1_HUMANDisease (CLN2)121908195A/BG77R
04UniProtVAR_009604Q100RTPP1_HUMANPolymorphism1800746A/BQ100R
05UniProtVAR_016790R127QTPP1_HUMANDisease (CLN2)121908204A/BR127Q
06UniProtVAR_016791S153PTPP1_HUMANDisease (CLN2)  ---A/BS153P
07UniProtVAR_005642R175HTPP1_HUMANPolymorphism764922748A/BR175H
08UniProtVAR_063640P202LTPP1_HUMANDisease (CLN2)121908205A/BP202L
09UniProtVAR_009605R206CTPP1_HUMANDisease (CLN2)28940573A/BR206C
10UniProtVAR_016792R206HTPP1_HUMANDisease (CLN2)121908209A/BR206H
11UniProtVAR_066884Y209HTPP1_HUMANDisease (CLN2)  ---A/BY209H
12UniProtVAR_066885R266QTPP1_HUMANDisease (CLN2)757953998A/BR266Q
13UniProtVAR_016793V277MTPP1_HUMANDisease (CLN2)121908207A/BV277M
14UniProtVAR_016794Q278PTPP1_HUMANDisease (CLN2)  ---A/BQ278P
15UniProtVAR_072749Q278RTPP1_HUMANDisease (CLN2)796053439A/BQ278R
16UniProtVAR_016795G284VTPP1_HUMANDisease (CLN2)119455957A/BG284V
17UniProtVAR_016796N286STPP1_HUMANDisease (CLN2)119455958A/BN286S
18UniProtVAR_009606I287NTPP1_HUMANDisease (CLN2)121908196A/BI287N
19UniProtVAR_066886R339QTPP1_HUMANDisease (CLN2)765380155A/BR339Q
20UniProtVAR_009607E343KTPP1_HUMANDisease (CLN2)121908197A/BE343K
21UniProtVAR_016797T353PTPP1_HUMANDisease (CLN2)121908206A/BT353P
22UniProtVAR_005643C365RTPP1_HUMANDisease (CLN2)119455953A/BC365R
23UniProtVAR_005644C365YTPP1_HUMANDisease (CLN2)119455954A/BC365Y
24UniProtVAR_066887S382RTPP1_HUMANDisease (CLN2)  ---A/BS382R
25UniProtVAR_009608V385DTPP1_HUMANDisease (CLN2)121908198A/BV385D
26UniProtVAR_009609G389ETPP1_HUMANDisease (CLN2)121908199A/BG389E
27UniProtVAR_009610Q422HTPP1_HUMANDisease (CLN2)121908200A/BQ422H
28UniProtVAR_016798K428NTPP1_HUMANDisease (CLN2)  ---A/BK428N
29UniProtVAR_005645R447HTPP1_HUMANDisease (CLN2)119455956A/BR447H
30UniProtVAR_066888A448VTPP1_HUMANDisease (CLN2)  ---A/BA448V
31UniProtVAR_009611A454ETPP1_HUMANDisease (CLN2)121908201A/BA454E
32UniProtVAR_070917V466GTPP1_HUMANDisease (SCAR7)398122959A/BV466G
33UniProtVAR_016799G473RTPP1_HUMANDisease (CLN2)121908203A/BG473R
34UniProtVAR_009612S475LTPP1_HUMANDisease (CLN2)121908202A/BS475L
35UniProtVAR_016800F481CTPP1_HUMANDisease (CLN2)  ---A/BF481C
36UniProtVAR_058435G482RTPP1_HUMANDisease (CLN2)121908208A/BG482R
37UniProtVAR_066889G501CTPP1_HUMANDisease (CLN2)  ---A/BG501C
38UniProtVAR_066890N504YTPP1_HUMANDisease (CLN2)  ---A/BN504Y
39UniProtVAR_063641P544STPP1_HUMANDisease (CLN2)121908210A/BP544S
40UniProtVAR_066891W548RTPP1_HUMANDisease (CLN2)  ---A/BW548R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (40, 160)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_037572S62LTPP1_HUMANPolymorphism2734715A/BS62L
02UniProtVAR_066883S62TTPP1_HUMANDisease (CLN2)  ---A/BS62T
03UniProtVAR_009603G77RTPP1_HUMANDisease (CLN2)121908195A/BG77R
04UniProtVAR_009604Q100RTPP1_HUMANPolymorphism1800746A/BQ100R
05UniProtVAR_016790R127QTPP1_HUMANDisease (CLN2)121908204A/BR127Q
06UniProtVAR_016791S153PTPP1_HUMANDisease (CLN2)  ---A/BS153P
07UniProtVAR_005642R175HTPP1_HUMANPolymorphism764922748A/BR175H
08UniProtVAR_063640P202LTPP1_HUMANDisease (CLN2)121908205A/BP202L
09UniProtVAR_009605R206CTPP1_HUMANDisease (CLN2)28940573A/BR206C
10UniProtVAR_016792R206HTPP1_HUMANDisease (CLN2)121908209A/BR206H
11UniProtVAR_066884Y209HTPP1_HUMANDisease (CLN2)  ---A/BY209H
12UniProtVAR_066885R266QTPP1_HUMANDisease (CLN2)757953998A/BR266Q
13UniProtVAR_016793V277MTPP1_HUMANDisease (CLN2)121908207A/BV277M
14UniProtVAR_016794Q278PTPP1_HUMANDisease (CLN2)  ---A/BQ278P
15UniProtVAR_072749Q278RTPP1_HUMANDisease (CLN2)796053439A/BQ278R
16UniProtVAR_016795G284VTPP1_HUMANDisease (CLN2)119455957A/BG284V
17UniProtVAR_016796N286STPP1_HUMANDisease (CLN2)119455958A/BN286S
18UniProtVAR_009606I287NTPP1_HUMANDisease (CLN2)121908196A/BI287N
19UniProtVAR_066886R339QTPP1_HUMANDisease (CLN2)765380155A/BR339Q
20UniProtVAR_009607E343KTPP1_HUMANDisease (CLN2)121908197A/BE343K
21UniProtVAR_016797T353PTPP1_HUMANDisease (CLN2)121908206A/BT353P
22UniProtVAR_005643C365RTPP1_HUMANDisease (CLN2)119455953A/BC365R
23UniProtVAR_005644C365YTPP1_HUMANDisease (CLN2)119455954A/BC365Y
24UniProtVAR_066887S382RTPP1_HUMANDisease (CLN2)  ---A/BS382R
25UniProtVAR_009608V385DTPP1_HUMANDisease (CLN2)121908198A/BV385D
26UniProtVAR_009609G389ETPP1_HUMANDisease (CLN2)121908199A/BG389E
27UniProtVAR_009610Q422HTPP1_HUMANDisease (CLN2)121908200A/BQ422H
28UniProtVAR_016798K428NTPP1_HUMANDisease (CLN2)  ---A/BK428N
29UniProtVAR_005645R447HTPP1_HUMANDisease (CLN2)119455956A/BR447H
30UniProtVAR_066888A448VTPP1_HUMANDisease (CLN2)  ---A/BA448V
31UniProtVAR_009611A454ETPP1_HUMANDisease (CLN2)121908201A/BA454E
32UniProtVAR_070917V466GTPP1_HUMANDisease (SCAR7)398122959A/BV466G
33UniProtVAR_016799G473RTPP1_HUMANDisease (CLN2)121908203A/BG473R
34UniProtVAR_009612S475LTPP1_HUMANDisease (CLN2)121908202A/BS475L
35UniProtVAR_016800F481CTPP1_HUMANDisease (CLN2)  ---A/BF481C
36UniProtVAR_058435G482RTPP1_HUMANDisease (CLN2)121908208A/BG482R
37UniProtVAR_066889G501CTPP1_HUMANDisease (CLN2)  ---A/BG501C
38UniProtVAR_066890N504YTPP1_HUMANDisease (CLN2)  ---A/BN504Y
39UniProtVAR_063641P544STPP1_HUMANDisease (CLN2)121908210A/BP544S
40UniProtVAR_066891W548RTPP1_HUMANDisease (CLN2)  ---A/BW548R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SEDOLISINPS51695 Sedolisin domain profile.TPP1_HUMAN199-563
 
  2A:199-563
B:199-563
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SEDOLISINPS51695 Sedolisin domain profile.TPP1_HUMAN199-563
 
  2A:199-563
B:199-563
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SEDOLISINPS51695 Sedolisin domain profile.TPP1_HUMAN199-563
 
  4A:199-563
B:199-563

(-) Exons   (12, 24)

Asymmetric Unit (12, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002994271aENSE00001348942chr11:6640692-664061578TPP1_HUMAN1-660--
1.1iENST000002994271iENSE00001307417chr11:6640498-664042772TPP1_HUMAN6-30252A:20-30
B:20-30
11
11
1.1nENST000002994271nENSE00001319244chr11:6640146-6640007140TPP1_HUMAN30-77482A:30-77
B:30-77
48
48
1.2bENST000002994272bENSE00001102231chr11:6639007-6638857151TPP1_HUMAN77-127512A:77-127
B:77-127
51
51
1.3bENST000002994273bENSE00001315022chr11:6638659-6638532128TPP1_HUMAN127-170442A:127-170
B:127-170
44
44
1.3iENST000002994273iENSE00001102253chr11:6638384-6638206179TPP1_HUMAN170-229602A:170-229 (gaps)
B:170-229 (gaps)
60
60
1.4bENST000002994274bENSE00001102240chr11:6638090-6637892199TPP1_HUMAN230-296672A:230-296
B:230-296
67
67
1.5ENST000002994275ENSE00001102236chr11:6637734-6637546189TPP1_HUMAN296-359642A:296-359
B:296-359
64
64
1.6bENST000002994276bENSE00001102252chr11:6637305-663723670TPP1_HUMAN359-382242A:359-382
B:359-382
24
24
1.7bENST000002994277bENSE00001102248chr11:6636793-6636673121TPP1_HUMAN382-422412A:382-422
B:382-422
41
41
1.7fENST000002994277fENSE00001102249chr11:6636560-6636402159TPP1_HUMAN423-475532A:423-475
B:423-475
53
53
1.8ENST000002994278ENSE00001102238chr11:6636222-6636097126TPP1_HUMAN476-517422A:476-517
B:476-517
42
42
1.9dENST000002994279dENSE00001826904chr11:6635917-66340001918TPP1_HUMAN518-563462A:518-563
B:518-563
46
46

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:529
 aligned with TPP1_HUMAN | O14773 from UniProtKB/Swiss-Prot  Length:563

    Alignment length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         563 
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559   | 
           TPP1_HUMAN    20 SYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTSSLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPSYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNP-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeee.....eeeeeeee...hhhhhhhhhhhhhh..........hhhhhhhhhh.hhhhhhhhhhhhhhhh.eeeee.....eeeeeeehhhhhhhh.....eeee......eeee.......hhhhh..eeeee.........----------------....hhhhhhhhh..............eeeeee......hhhhhhhhhhhhh..........eee........hhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhh.......eeee...ee.hhhhhhhhhhhhhhhhhhhhh..eeeee........ee....ee...ee.......eeeeeeee........eee......eeeeeee.hhhhhhhhhhhhhhh....hhhhh...eeee..eeee...eeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh....ee.....eee.........eeee............eehhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------L--------------R----------------------R--------------------------Q-------------------------P---------------------H--------------------------L---C--H--------------------------------------------------------Q----------MP-----V-SN---------------------------------------------------Q---K---------P-----------R----------------R--D---E--------------------------------H-----N------------------HV-----E-----------G------R-L-----CR------------------C--Y---------------------------------------S---R---------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------H-----------------------------------------------------------------------R--------------------------------------------------------------------------------------Y------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEDOLISIN  PDB: A:199-563 UniProt: 199-563                                                                                                                                                                                                                                                                                                                                   - PROSITE
           Transcript 1 (1) Exon 1.1i  ----------------------------------------------Exon 1.2b  PDB: A:77-127 UniProt: 77-127           ------------------------------------------Exon 1.3i  PDB: A:170-229 (gaps) UniProt: 170-229           Exon 1.4b  PDB: A:230-296 UniProt: 230-296                         --------------------------------------------------------------Exon 1.6b  PDB: A:359-38----------------------------------------Exon 1.7f  PDB: A:423-475 UniProt: 423-475           Exon 1.8  PDB: A:476-517 UniProt: 476-517 Exon 1.9d  PDB: A:518-563 UniProt: 518-563    - Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.1n  PDB: A:30-77 UniProt: 30-77          -------------------------------------------------Exon 1.3b  PDB: A:127-170 UniProt: 127-170  -----------------------------------------------------------------------------------------------------------------------------Exon 1.5  PDB: A:296-359 UniProt: 296-359                       ----------------------Exon 1.7b  PDB: A:382-422                ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3ee6 A  20 SYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS----------------HLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPSYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNPR 564
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179|        -       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559     
                                                                                                                                                                                          180              197                                                                                                                                                                                                                                                                                                                                                                               

Chain B from PDB  Type:PROTEIN  Length:529
 aligned with TPP1_HUMAN | O14773 from UniProtKB/Swiss-Prot  Length:563

    Alignment length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         563 
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559   | 
           TPP1_HUMAN    20 SYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTSSLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPSYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNP-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee.....eeeeeeee...hhhhhhhhhhhhhh..........hhhhhhhhhh.hhhhhhhhhhhhhhhhheeee......eeeeeeehhhhhhhh.....eeeee....eeeee.......hhhhh..eeeee.........----------------....hhhhhhhhh..............eeeeee......hhhhhhhhhhhhh..........eee........hhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhh.......eeee...ee.hhhhhhhhhhhhhhhhhhhhh..eeeee........eee..eee...ee.......eeeeeeee........eee......eeeeeee.hhhhhhhhhhhhhhh............eeee..eeee...eeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh....ee.....eeeeee....eeeeee............eehhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------L--------------R----------------------R--------------------------Q-------------------------P---------------------H--------------------------L---C--H--------------------------------------------------------Q----------MP-----V-SN---------------------------------------------------Q---K---------P-----------R----------------R--D---E--------------------------------H-----N------------------HV-----E-----------G------R-L-----CR------------------C--Y---------------------------------------S---R---------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------H-----------------------------------------------------------------------R--------------------------------------------------------------------------------------Y------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEDOLISIN  PDB: B:199-563 UniProt: 199-563                                                                                                                                                                                                                                                                                                                                   - PROSITE
           Transcript 1 (1) Exon 1.1i  ----------------------------------------------Exon 1.2b  PDB: B:77-127 UniProt: 77-127           ------------------------------------------Exon 1.3i  PDB: B:170-229 (gaps) UniProt: 170-229           Exon 1.4b  PDB: B:230-296 UniProt: 230-296                         --------------------------------------------------------------Exon 1.6b  PDB: B:359-38----------------------------------------Exon 1.7f  PDB: B:423-475 UniProt: 423-475           Exon 1.8  PDB: B:476-517 UniProt: 476-517 Exon 1.9d  PDB: B:518-563 UniProt: 518-563    - Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.1n  PDB: B:30-77 UniProt: 30-77          -------------------------------------------------Exon 1.3b  PDB: B:127-170 UniProt: 127-170  -----------------------------------------------------------------------------------------------------------------------------Exon 1.5  PDB: B:296-359 UniProt: 296-359                       ----------------------Exon 1.7b  PDB: B:382-422                ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3ee6 B  20 SYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS----------------HLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPSYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNPR 564
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179|        -       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559     
                                                                                                                                                                                          180              197                                                                                                                                                                                                                                                                                                                                                                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3EE6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3EE6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3EE6)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (TPP1_HUMAN | O14773)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008240    tripeptidyl-peptidase activity    Catalysis of the release of an N-terminal tripeptide from a polypeptide.
biological process
    GO:0036498    IRE1-mediated unfolded protein response    A series of molecular signals mediated by the endoplasmic reticulum stress sensor IRE1 (Inositol-requiring transmembrane kinase/endonuclease). Begins with activation of IRE1 in response to endoplasmic reticulum (ER) stress, and ends with regulation of a downstream cellular process, e.g. transcription. One target of activated IRE1 is the transcription factor HAC1 in yeast, or XBP1 in mammals; IRE1 cleaves an intron of a mRNA coding for HAC1/XBP1 to generate an activated HAC1/XBP1 transcription factor, which controls the up regulation of UPR-related genes. At least in mammals, IRE1 can also signal through additional intracellular pathways including JNK and NF-kappaB.
    GO:0045453    bone resorption    The process in which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products.
    GO:0007417    central nervous system development    The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
    GO:0030855    epithelial cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0007040    lysosome organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0050885    neuromuscular process controlling balance    Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors.
    GO:0043171    peptide catabolic process    The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another.
    GO:0030163    protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0043202    lysosomal lumen    The volume enclosed within the lysosomal membrane.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0042470    melanosome    A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TPP1_HUMAN | O147731r60 3edy

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