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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF MRE11 WITH MANGANESE

Authors :   Y. B. Park, Y. Cho

Date :   18 Feb 11 (Deposition) - 25 May 11 (Release) - 25 May 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.21

Chains :   Asym./Biol. Unit : A

Keywords :   Dna Repair, Calcineurin-Like Phosphoesterase, Dna Double-Strand Break Repair Nuclease, Rad50, Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. S. Lim, J. S. Kim, Y. B. Park, G. H. Gwon, Y. Cho
Crystal Structure Of The Mre11-Rad50-Atp S Complex: Understanding The Interplay Between Mre11 And Rad50
To Be Published
PubMed: search

Molecule 1 - DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Taxid	:	562
	Expression System Vector	:	PLASMID
	Fragment	:	NUCLEASE DOMAIN (UNP RESIDUES 1-313)
	Gene	:	MJ1323, MRE11
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	2190

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MN	2	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:8 , HIS A:10 , ASP A:49 , HIS A:188 , MN A:402	BINDING SITE FOR RESIDUE MN A 401
2	AC2	SOFTWARE	ASP A:49 , ASN A:84 , HIS A:158 , HIS A:186 , MN A:401	BINDING SITE FOR RESIDUE MN A 402
3	AC3	SOFTWARE	ILE A:106 , ASP A:108 , TYR A:126 , ARG A:282 , PRO A:286	BINDING SITE FOR RESIDUE GOL A 411

(no "SS Bond" information available for 3AUZ)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:-2	-	Ser A:-1
2	Asn A:116	-	Gly A:117
3	Leu A:167	-	Asp A:168
4	Tyr A:210	-	Arg A:211

(no "SAP(SNP)/Variant" information available for 3AUZ)

(no "PROSITE Motif" information available for 3AUZ)

(no "Exon" information available for 3AUZ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:316
 aligned with MRE11_METJA | Q58719 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:316
                                1                                                                                                                                                                                                                                                                                                                       
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306      
          MRE11_METJA     - ----MMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMPRRLGEESPLALLKDYVKILDGKDVINVNGEEIFICGTYYHKKSKREEMLDKLKNFESEAKNYKKKILMLHQGINPYIPLDYELEHFDLPKFSYYALGHIHKRILERFNDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIEKIDIECREFVEVNIKDKKSFNEAVNKIERCKNKPVVFGKIKREFKPWFDTLKDKILINKAIIVDDEFIDMPD 312
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..........hhhhhhhhhhhhhhhhhh..eeee..hhhhh........hhhhh....ee..eeeee......eeeeee...hhhhhhhhhhhhhhhhhh......eeeeee.............hhhhh....eeeee.......eee..eeeee..........hhhhhhhh....eee.......hhhhhee.......eeeeee.hhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh.eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3auz A  -3 RGSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMPRRLGEESPLALLKDYVKILDGKDVINVNGEEIFICGTYYHKKSKREEMLDKLKNFESEAKNYKKKILMLHQGINPYIPLDYELEHFDLPKFSYYALGHIHKRILERFNDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIEKIDIECREFVEVNIKDKKSFNEAVNKIERCKNKPVVFGKIKREFKPWFDTLKDKILINKAIIVDDEFIDMPD 312
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3AUZ)

(no "CATH Domain" information available for 3AUZ)

(no "Pfam Domain" information available for 3AUZ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (MRE11_METJA | Q58719)

molecular function
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0004527	exonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0006302	double-strand break repair	The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.

Asymmetric/Biological Unit
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asn A:116 - Gly A:117	[ RasMol ]
		Gly A:-2 - Ser A:-1	[ RasMol ]
		Leu A:167 - Asp A:168	[ RasMol ]
		Tyr A:210 - Arg A:211	[ RasMol ]

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	MRE11_METJA \| Q58719
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	MRE11_METJA \| Q58719
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	MRE11_METJA \| Q58719	:	3av0 4tug 4tui 5dny 5f3w

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