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(-) Description

Title :  STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) FROM ORYZA SATIVA L
 
Authors :  Y. Kakuta, K. Chaen, J. Noguchi, N. Vu, M. Kimura
Date :  20 Aug 10  (Deposition) - 28 Sep 11  (Release) - 28 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Starch-Branching, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Noguchi, K. Chaen, N. T. Vu, T. Akasaka, H. Shimada, T. Nakashima, A. Nishi, H. Satoh, T. Omori, Y. Kakuta, M. Kimura
Crystal Structure Of The Branching Enzyme I (Bei) From Oryz Sativa L With Implications For Catalysis And Substrate Binding.
Glycobiology V. 21 1108 2011
PubMed-ID: 21493662  |  Reference-DOI: 10.1093/GLYCOB/CWR049

(-) Compounds

Molecule 1 - OS06G0726400 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 66-820
    Gene: OS06G0726400, SBE1
    Organism Common: JAPANESE RICE
    Organism Scientific: ORYZA SATIVA JAPONICA GROUP
    Organism Taxid: 39947
    Synonym: STARCH-BRANCHING ENZYME I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 38)

Asymmetric/Biological Unit (5, 38)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL32Ligand/IonGLYCEROL
5SIN2Ligand/IonSUCCINIC ACID

(-) Sites  (38, 38)

Asymmetric Unit (38, 38)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:421 , LEU A:422 , ALA A:423 , ASN A:453 , ARG A:454 , CYS A:460 , SIN A:766BINDING SITE FOR RESIDUE BME A 756
02AC2SOFTWAREGLU A:185 , ARG A:342 , GLU A:399 , SER A:466 , HIS A:467 , HOH A:1166BINDING SITE FOR RESIDUE GOL A 757
03AC3SOFTWAREHIS A:44 , PHE A:100 , TRP A:319 , GLU A:320 , GOL A:780 , HOH A:995 , HOH A:1004 , HOH A:1307BINDING SITE FOR RESIDUE EPE A 758
04AC4SOFTWAREARG A:174 , LYS A:307 , MET A:333 , ASP A:334 , ASN A:357 , LEU A:390 , HOH A:799 , HOH A:1069BINDING SITE FOR RESIDUE GOL A 759
05AC5SOFTWAREASP A:492 , ARG A:563 , GOL A:764 , HOH A:1390BINDING SITE FOR RESIDUE GOL A 760
06AC6SOFTWAREGLY A:473BINDING SITE FOR RESIDUE ACT A 761
07AC7SOFTWAREASN A:384 , HIS A:388 , PRO A:410 , VAL A:411 , ASP A:412 , GLY A:417 , HOH A:1155 , HOH A:1243BINDING SITE FOR RESIDUE GOL A 762
08AC8SOFTWAREASP A:36 , CYS A:39 , LEU A:40BINDING SITE FOR RESIDUE BME A 763
09AC9SOFTWAREARG A:563 , TYR A:566 , LEU A:642 , GLY A:646 , GOL A:760 , GOL A:765BINDING SITE FOR RESIDUE GOL A 764
10BC1SOFTWARETYR A:566 , LEU A:642 , GOL A:764 , GOL A:770 , HOH A:857BINDING SITE FOR RESIDUE GOL A 765
11BC2SOFTWAREASP A:400 , GLY A:403 , ARG A:421 , ARG A:455 , BME A:756 , HOH A:825 , HOH A:1144 , HOH A:1196 , HOH A:1222BINDING SITE FOR RESIDUE SIN A 766
12BC3SOFTWARELYS A:94 , GLU A:96 , HOH A:973BINDING SITE FOR RESIDUE GOL A 767
13BC4SOFTWAREGLY A:622 , TYR A:623 , LYS A:624 , PHE A:671 , HOH A:1220BINDING SITE FOR RESIDUE GOL A 768
14BC5SOFTWAREARG A:182 , ARG A:212 , TYR A:216 , ASN A:217 , GLY A:264 , GLU A:579 , HOH A:1229 , HOH A:1427BINDING SITE FOR RESIDUE GOL A 769
15BC6SOFTWAREALA A:569 , VAL A:643 , GOL A:765 , GOL A:787 , HOH A:1113 , HOH A:1421BINDING SITE FOR RESIDUE GOL A 770
16BC7SOFTWAREPHE A:146 , GLY A:152 , ALA A:153 , TYR A:155 , SER A:228 , ARG A:246 , PRO A:664 , GLY A:665 , VAL A:666 , HOH A:808 , HOH A:1020BINDING SITE FOR RESIDUE GOL A 771
17BC8SOFTWAREARG A:454 , ARG A:455 , TYR A:456 , THR A:457BINDING SITE FOR RESIDUE GOL A 772
18BC9SOFTWAREGLU A:84 , PHE A:85 , PRO A:117 , HOH A:1095 , HOH A:1383BINDING SITE FOR RESIDUE GOL A 773
19CC1SOFTWAREGLY A:301 , HOH A:814 , HOH A:1331BINDING SITE FOR RESIDUE GOL A 774
20CC2SOFTWAREARG A:440 , LYS A:441 , GLU A:580 , PHE A:581 , ALA A:636 , TYR A:691 , HOH A:1139BINDING SITE FOR RESIDUE GOL A 775
21CC3SOFTWARESER A:555 , HIS A:561 , HOH A:1257 , HOH A:1470BINDING SITE FOR RESIDUE GOL A 776
22CC4SOFTWARETRP A:160 , GLU A:251 , LYS A:254 , TYR A:331 , GLU A:335BINDING SITE FOR RESIDUE GOL A 777
23CC5SOFTWARELYS A:57 , PHE A:58 , ARG A:70 , ARG A:323BINDING SITE FOR RESIDUE GOL A 778
24CC6SOFTWAREVAL A:411BINDING SITE FOR RESIDUE GOL A 779
25CC7SOFTWARETRP A:72 , PHE A:100 , HIS A:294 , GLU A:295 , EPE A:758 , HOH A:1096 , HOH A:1169 , HOH A:1467BINDING SITE FOR RESIDUE GOL A 780
26CC8SOFTWAREGLY A:189 , TYR A:200 , ALA A:223 , HIS A:227 , SER A:244 , ARG A:246 , SER A:247 , HOH A:940BINDING SITE FOR RESIDUE GOL A 781
27CC9SOFTWAREARG A:649 , GLY A:651 , LEU A:681 , SIN A:789 , HOH A:1053 , HOH A:1329BINDING SITE FOR RESIDUE GOL A 782
28DC1SOFTWAREASP A:15 , TRP A:88 , ARG A:125BINDING SITE FOR RESIDUE GOL A 783
29DC2SOFTWAREGLU A:196 , PRO A:630 , ASN A:676 , HOH A:855 , HOH A:1076 , HOH A:1450BINDING SITE FOR RESIDUE GOL A 784
30DC3SOFTWAREPRO A:74 , ALA A:75 , LYS A:97 , GLU A:295 , HOH A:1305BINDING SITE FOR RESIDUE GOL A 785
31DC4SOFTWARELYS A:177 , PRO A:178 , ASP A:179 , PRO A:181 , PHE A:420 , LYS A:459 , HOH A:876 , HOH A:971 , HOH A:974 , HOH A:1428BINDING SITE FOR RESIDUE GOL A 786
32DC5SOFTWARELYS A:565 , ASN A:568 , ALA A:569 , GLN A:572 , GOL A:770 , HOH A:1295BINDING SITE FOR RESIDUE GOL A 787
33DC6SOFTWAREASP A:439 , PRO A:616 , ARG A:685 , HOH A:1075BINDING SITE FOR RESIDUE GOL A 788
34DC7SOFTWAREGLY A:622 , VAL A:654 , ASP A:655 , LYS A:679 , VAL A:680 , LEU A:681 , GOL A:782BINDING SITE FOR RESIDUE SIN A 789
35DC8SOFTWAREASP A:98 , LYS A:99BINDING SITE FOR RESIDUE GOL A 790
36DC9SOFTWAREGLN A:494 , PRO A:495 , HOH A:1436BINDING SITE FOR RESIDUE GOL A 791
37EC1SOFTWARESER A:228 , TYR A:229 , PRO A:667 , GLU A:668 , HOH A:808 , HOH A:1259BINDING SITE FOR RESIDUE GOL A 792
38EC2SOFTWARELYS A:441 , GLU A:580BINDING SITE FOR RESIDUE GOL A 793

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3AML)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:7 -Val A:8
2Val A:8 -Asp A:9
3Ala A:153 -Pro A:154
4Lys A:358 -Gly A:359

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3AML)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3AML)

(-) Exons   (0, 0)

(no "Exon" information available for 3AML)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:693
 aligned with GLGB_ORYSJ | Q01401 from UniProtKB/Swiss-Prot  Length:820

    Alignment length:693
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761   
           GLGB_ORYSJ    72 EVDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREE 764
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..eeeeeee.....eeeeee.hhh........ee....eeeeeee...........eeeeeeee......eee.......eee........eeeee...hhhhh..............eeeeee...........hhhhhhhhhhhhhhhh...eeeee..ee..hhhhh.....eeeee.hhhhhhhhhhhhhhhhhhh..eeeeee...........hhhhhh...hhhhh...hhhh.ee....ee.....hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhh...........hhhhh.....hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee.............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh........hhhhh........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee....eeeeee..eeeeee......eeeeeeee....eeeeeee..hhhhh..........ee.ee.....hhhhh.....eeeeeee...eeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3aml A   7 EVDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREE 699
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696   


Chain A from PDB  Type:PROTEIN  Length:693
 aligned with Q0D9D0_ORYSJ | Q0D9D0 from UniProtKB/TrEMBL  Length:820

    Alignment length:693
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761   
         Q0D9D0_ORYSJ    72 EVDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREE 764
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..eeeeeee.....eeeeee.hhh........ee....eeeeeee...........eeeeeeee......eee.......eee........eeeee...hhhhh..............eeeeee...........hhhhhhhhhhhhhhhh...eeeee..ee..hhhhh.....eeeee.hhhhhhhhhhhhhhhhhhh..eeeeee...........hhhhhh...hhhhh...hhhh.ee....ee.....hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhh...........hhhhh.....hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee.............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh........hhhhh........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee....eeeeee..eeeeee......eeeeeeee....eeeeeee..hhhhh..........ee.ee.....hhhhh.....eeeeeee...eeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3aml A   7 EVDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREE 699
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3AML)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3AML)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3AML)

(-) Gene Ontology  (13, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GLGB_ORYSJ | Q01401)
molecular function
    GO:0003844    1,4-alpha-glucan branching enzyme activity    Catalysis of the transfer of a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0043169    cation binding    Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0005978    glycogen biosynthetic process    The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
    GO:0019252    starch biosynthetic process    The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.
    GO:0005982    starch metabolic process    The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose.
cellular component
    GO:0009501    amyloplast    A plastid whose main function is to synthesize and store starch.
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain A   (Q0D9D0_ORYSJ | Q0D9D0)
molecular function
    GO:0003844    1,4-alpha-glucan branching enzyme activity    Catalysis of the transfer of a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0043169    cation binding    Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0005978    glycogen biosynthetic process    The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.

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    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
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    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
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    DC6  [ RasMol ]  +environment [ RasMol ]
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    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:153 - Pro A:154   [ RasMol ]  
    Glu A:7 - Val A:8   [ RasMol ]  
    Lys A:358 - Gly A:359   [ RasMol ]  
    Val A:8 - Asp A:9   [ RasMol ]  
 

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 Related Entries

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        GLGB_ORYSJ | Q01401: 3amk 3vu2
        Q0D9D0_ORYSJ | Q0D9D0: 3amk

(-) Related Entries Specified in the PDB File

3amk TRUNCATED STRUCTURE