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(-) Description

Title :  Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR
 
Authors :  B. H. M. Mooers, B. F. Eichman, P. S. Ho
Date :  04 Feb 97  (Deposition) - 05 Aug 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.68
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Z-Dna, Double Helix, Modified, Overhanging Base, Flipped- Out Base (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. H. Mooers, B. F. Eichman, P. S. Ho
The Structures And Relative Stabilities Of D(G X G) Reverse Hoogsteen, D(G X T) Reverse Wobble, And D(G X C) Reverse Watson-Crick Base-Pairs In Dna Crystals.
J. Mol. Biol. V. 269 796 1997
PubMed-ID: 9223642  |  Reference-DOI: 10.1006/JMBI.1997.1100
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*G)-3')
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
3NCO1Ligand/IonCOBALT HEXAMMINE(III)

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:66 , HOH A:67 , HOH A:68 , HOH A:69 , HOH A:70 , HOH A:71 , DG B:14BINDING SITE FOR RESIDUE MG A 16
2AC2SOFTWAREDC A:4 , DG A:5 , HOH A:44 , HOH A:61 , DG B:14 , HOH B:63BINDING SITE FOR RESIDUE NCO A 15

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 313D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 313D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 313D)

(-) Exons   (0, 0)

(no "Exon" information available for 313D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:7
                                      
                  313d A  1 GcGCGCG  7
                             |     
                             |     
                             2-5CM 

Chain B from PDB  Type:DNA  Length:7
                                      
                  313d B  8 GcGCGCG 14
                             |     
                             9-5CM 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 313D)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 313D)

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 Related Entries

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