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(-) Description

Title :  CRYSTAL STRUCTURE OF DNAD-LIKE REPLICATION PROTEIN FROM STREPTOCOCCUS MUTANS UA159, GI 24377835, RESIDUES 127-199
 
Authors :  N. E. C. Duke, S. Clancy, E. Duggan, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  02 Nov 07  (Deposition) - 25 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Replication Protein, Dnad-Like, Gi 24377835, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. E. C. Duke, S. Clancy, E. Duggan, A. Joachimiak
Crystal Structure Of Dnad-Like Replication Protein From Streptococcus Mutans Ua159.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNAD-LIKE REPLICATION PROTEIN
    Atcc: 700610
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 127-199
    Gene: SMU_1465C
    Organism Scientific: STREPTOCOCCUS MUTANS UA159
    Organism Taxid: 210007
    Strain: UA159 / SEROTYPE C

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2ZN9Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:146 , ASN B:185 , GLU B:189BINDING SITE FOR RESIDUE ZN A 501
2AC2SOFTWAREASP A:157 , GLU A:199 , ASP B:153BINDING SITE FOR RESIDUE ZN B 502
3AC3SOFTWAREASP B:146BINDING SITE FOR RESIDUE ZN B 503
4AC4SOFTWAREASP A:154 , GLU B:199BINDING SITE FOR RESIDUE ZN A 504
5AC5SOFTWAREASP A:159 , ARG A:162 , GLU B:145BINDING SITE FOR RESIDUE ZN A 505
6AC6SOFTWAREARG A:195 , ASP B:154BINDING SITE FOR RESIDUE ZN B 506
7AC7SOFTWAREASP A:130BINDING SITE FOR RESIDUE ZN A 507
8AC8SOFTWAREASP B:157 , GLU B:198BINDING SITE FOR RESIDUE ZN B 508
9AC9SOFTWAREGLU B:129 , GLU B:132 , MSE B:138BINDING SITE FOR RESIDUE ZN B 509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZC2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZC2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2ZC2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with Q8DT97_STRMU | Q8DT97 from UniProtKB/TrEMBL  Length:231

    Alignment length:78
                                   131       141       151       161       171       181       191        
         Q8DT97_STRMU   122 NALKDLVEDFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAILRNWRHEGISTLRQVEE 199
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains 2zc   2A00 A:125-199 DnaD domain-like                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhh---hhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 2zc2 A 125 NAL---VEDFERELGRmLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAILRNWRHEGISTLRQVEE 199
                              |   |131      |141       151       161       171       181       191        
                              | 128       138-MSE                                                         
                            127                                                                           


Chain B from PDB  Type:PROTEIN  Length:75
 aligned with Q8DT97_STRMU | Q8DT97 from UniProtKB/TrEMBL  Length:231

    Alignment length:78
                                   131       141       151       161       171       181       191        
         Q8DT97_STRMU   122 NALKDLVEDFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAILRNWRHEGISTLRQVEE 199
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains 2zc   2B00 B:125-199 DnaD domain-like                                          CATH domains
           Pfam domains (1) ------DnaB_2-2zc2B01 B:128-199                                                 Pfam domains (1)
           Pfam domains (2) ------DnaB_2-2zc2B02 B:128-199                                                 Pfam domains (2)
         Sec.struct. author hhh---hhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 2zc2 B 125 NAL---VEDFERELGRmLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAILRNWRHEGISTLRQVEE 199
                              |   |131      |141       151       161       171       181       191        
                            127 128       138-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZC2)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: DnaB_2] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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