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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMUS THERMOPHILUS
 
Authors :  M. Kanagawa, S. Kuramitsu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  06 May 07  (Deposition) - 06 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Metal Binding Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Kanagawa, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Uncharacterized Conserved Protein From Thermus Thermophilus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN TTHA0625
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-11A
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymUNCHARACTERIZED CONSERVED PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric/Biological Unit (1, 13)
No.NameCountTypeFull Name
1CO13Ligand/IonCOBALT (II) ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:37 , ASN A:65 , HIS A:145 , HIS A:170 , HOH A:317BINDING SITE FOR RESIDUE CO A 253
02AC2SOFTWAREGLU C:37 , ASN C:65 , HIS C:145 , HIS C:170 , HOH C:387BINDING SITE FOR RESIDUE CO C 253
03AC3SOFTWAREGLU B:37 , ASN B:65 , HIS B:145 , HIS B:170 , HOH B:335BINDING SITE FOR RESIDUE CO B 253
04AC4SOFTWAREHIS D:157 , ASP D:160BINDING SITE FOR RESIDUE CO D 253
05AC5SOFTWAREASP C:160 , LYS C:183BINDING SITE FOR RESIDUE CO C 254
06AC6SOFTWAREARG A:28 , TYR A:247 , ARG B:51 , GLU B:55BINDING SITE FOR RESIDUE CO A 254
07AC7SOFTWAREARG D:28 , TYR D:247BINDING SITE FOR RESIDUE CO D 254
08AC8SOFTWAREARG B:28 , TYR B:247BINDING SITE FOR RESIDUE CO B 254
09AC9SOFTWAREGLU D:37 , ASN D:65 , HIS D:145 , HIS D:170 , HOH D:373BINDING SITE FOR RESIDUE CO D 297
10BC1SOFTWAREHIS A:157 , ASP A:160BINDING SITE FOR RESIDUE CO A 307
11BC2SOFTWAREASP B:160BINDING SITE FOR RESIDUE CO B 310
12BC3SOFTWAREASP B:8 , HIS B:170 , HIS B:172 , ASP B:190BINDING SITE FOR RESIDUE CO B 315
13BC4SOFTWAREASP C:8 , HIS C:170 , HIS C:172 , ASP C:190BINDING SITE FOR RESIDUE CO C 336

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z06)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Z06)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z06)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Z06)

(-) Exons   (0, 0)

(no "Exon" information available for 2Z06)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:252
 aligned with Q5SKL8_THET8 | Q5SKL8 from UniProtKB/TrEMBL  Length:252

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         Q5SKL8_THET8     1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
               SCOP domains d2z06a_ A: Hypothetical protein TTHA0625                                                                                                                                                                                                                     SCOP domains
               CATH domains 2z06A00 A:1-252 Phosphatase                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhh..eee.........hhhhhhhhh.ee.............eeeeee..eeeeeeeee.........hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhh....eeeee.........ee.....eee......ee.......hhhhhhhhhhhh...........eeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z06 A   1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  

Chain B from PDB  Type:PROTEIN  Length:252
 aligned with Q5SKL8_THET8 | Q5SKL8 from UniProtKB/TrEMBL  Length:252

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         Q5SKL8_THET8     1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
               SCOP domains d2z06b_ B: Hypothetical protein TTHA0625                                                                                                                                                                                                                     SCOP domains
               CATH domains 2z06B00 B:1-252 Phosphatase                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.eehhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhh...eee.........hhhhhhhhh.ee.............eeeeee..eeeeeeeee.........hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh.....eeeee.........ee.....eee....eeee.......hhhhhhhhhhhh...........eeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z06 B   1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  

Chain C from PDB  Type:PROTEIN  Length:252
 aligned with Q5SKL8_THET8 | Q5SKL8 from UniProtKB/TrEMBL  Length:252

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         Q5SKL8_THET8     1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
               SCOP domains d2z06c_ C: Hypothetical protein TTHA0625                                                                                                                                                                                                                     SCOP domains
               CATH domains 2z06C00 C:1-252 Phosphatase                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhh...eee........hhhhhhhhhh.ee.............eeeeee..eeeeeeeee.........hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhh....eeeee.........ee.....eee......ee.......hhhhhhhhhhhh...........eeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z06 C   1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  

Chain D from PDB  Type:PROTEIN  Length:252
 aligned with Q5SKL8_THET8 | Q5SKL8 from UniProtKB/TrEMBL  Length:252

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         Q5SKL8_THET8     1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
               SCOP domains d2z06d_ D: Hypothetical protein TTHA0625                                                                                                                                                                                                                     SCOP domains
               CATH domains 2z06D00 D:1-252 Phosphatase                                                                                                                                                                                                                                  CATH domains
           Pfam domains (1) ---YmdB-2z06D01 D:4-247                                                                                                                                                                                                                                ----- Pfam domains (1)
           Pfam domains (2) ---YmdB-2z06D02 D:4-247                                                                                                                                                                                                                                ----- Pfam domains (2)
           Pfam domains (3) ---YmdB-2z06D03 D:4-247                                                                                                                                                                                                                                ----- Pfam domains (3)
           Pfam domains (4) ---YmdB-2z06D04 D:4-247                                                                                                                                                                                                                                ----- Pfam domains (4)
         Sec.struct. author .eeeee.eehhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhh..eee.hhhhhhhhhhhhhhh...ee.............eeeeee..eeeeeeeee.........hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh....eeeee.........ee.....eee....eeee.......hhhhhhhhhhhh...........eeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z06 D   1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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        Q5SKL8_THET8 | Q5SKL82cv9

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