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(-) Description

Title :  MODELING BARMAH FOREST VIRUS STRUCTURAL PROTEINS
 
Authors :  V. A. Kostyuchenko, J. Jakana, X. Liu, A. D. Haddow, M. Aung, S. C. Weaver S. M. Lok
Date :  31 Mar 11  (Deposition) - 18 Apr 12  (Release) - 20 Mar 13  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  5.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L  (60x)
Keywords :  Alphavirus, Virus, Molecular Dynamics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. A. Kostyuchenko, J. Jakana, X. Liu, A. D. Haddow, M. Aung, S. C. Weaver, W. Chiu, S. Lok
The Structure Of Barmah Forest Virus As Revealed By Cryo- Electron Microscopy At A 6-Angstrom Resolution Has Detailed Transmembrane Protein Architecture And Interactions.
J. Virol. V. 85 9327 2011
PubMed-ID: 21752915  |  Reference-DOI: 10.1128/JVI.05015-11

(-) Compounds

Molecule 1 - CAPSID PROTEIN
    Chains: A, D, G, J
    EC Number: 3.4.21.90
    Engineered: YES
    Expression System: MESOCRICETUS AURATUS
    Expression System Cell Line: BHK-21
    Expression System Common: GOLDEN HAMSTER
    Expression System Taxid: 10036
    Organism Scientific: BARMAH FOREST VIRUS
    Organism Taxid: 11020
    Synonym: COAT PROTEIN
 
Molecule 2 - E1 ENVELOPE GLYCOPROTEIN
    Chains: B, E, H, K
    Engineered: YES
    Expression System: MESOCRICETUS AURATUS
    Expression System Cell Line: BHK-21
    Expression System Common: GOLDEN HAMSTER
    Expression System Taxid: 10036
    Organism Scientific: BARMAH FOREST VIRUS
    Organism Taxid: 11020
    Synonym: SPIKE GLYCOPROTEIN E1
 
Molecule 3 - E2 ENVELOPE GLYCOPROTEIN
    Chains: C, F, I, L
    Engineered: YES
    Expression System: MESOCRICETUS AURATUS
    Expression System Cell Line: BHK-21
    Expression System Common: GOLDEN HAMSTER
    Expression System Taxid: 10036
    Organism Scientific: BARMAH FOREST VIRUS
    Organism Taxid: 11020
    Synonym: SPIKE GLYCOPROTEIN E2

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (60x): ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2YEW)

(-) Sites  (0, 0)

(no "Site" information available for 2YEW)

(-) SS Bonds  (44, 44)

Asymmetric Unit
No.Residues
1B:49 -B:114
2B:62 -B:94
3B:63 -B:96
4B:68 -B:78
5B:259 -B:271
6B:301 -B:376
7B:306 -B:380
8B:328 -B:370
9C:18 -C:122
10C:21 -C:27
11C:90 -C:104
12E:49 -E:114
13E:62 -E:94
14E:63 -E:96
15E:68 -E:78
16E:259 -E:271
17E:301 -E:376
18E:306 -E:380
19E:328 -E:370
20F:18 -F:122
21F:21 -F:27
22F:90 -F:104
23H:49 -H:114
24H:62 -H:94
25H:63 -H:96
26H:68 -H:78
27H:259 -H:271
28H:301 -H:376
29H:306 -H:380
30H:328 -H:370
31I:18 -I:122
32I:21 -I:27
33I:90 -I:104
34K:49 -K:114
35K:62 -K:94
36K:63 -K:96
37K:68 -K:78
38K:259 -K:271
39K:301 -K:376
40K:306 -K:380
41K:328 -K:370
42L:18 -L:122
43L:21 -L:27
44L:90 -L:104

(-) Cis Peptide Bonds  (28, 28)

Asymmetric Unit
No.Residues
1Asp B:117 -Ala B:119
2Arg B:289 -Ile B:290
3Ile B:330 -Ser B:332
4Cys B:376 -Gly B:378
5Asp B:385 -Ile B:387
6Lys B:393 -Asn B:395
7Leu C:360 -Tyr C:361
8Pro C:402 -Gly C:403
9Arg E:289 -Ile E:290
10Ile E:330 -Ser E:332
11Cys E:376 -Gly E:378
12Asp E:385 -Ile E:387
13Lys E:393 -Asn E:395
14Leu F:360 -Tyr F:361
15Pro F:402 -Gly F:403
16Asp H:117 -Ala H:119
17Arg H:289 -Ile H:290
18Ile H:330 -Ser H:332
19Cys H:376 -Gly H:378
20Asp H:385 -Ile H:387
21Leu I:360 -Tyr I:361
22Pro I:402 -Gly I:403
23Arg K:289 -Ile K:290
24Ile K:330 -Ser K:332
25Cys K:376 -Gly K:378
26Lys K:393 -Asn K:395
27Leu L:360 -Tyr L:361
28Pro L:402 -Gly L:403

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 8)

Asymmetric Unit (2, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_BFV_001 *G826APOLS_BFV  ---  ---B/E/H/KG26A
2UniProtVAR_POLS_BFV_002 *K1020RPOLS_BFV  ---  ---B/E/H/KK220R
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 480)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_BFV_001 *G826APOLS_BFV  ---  ---B/E/H/KG26A
2UniProtVAR_POLS_BFV_002 *K1020RPOLS_BFV  ---  ---B/E/H/KK220R
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALPHAVIRUS_CPPS51690 Alphavirus core protein (CP) domain profile.POLS_BFV105-253
 
 
 		  4A:105-253
D:105-253
G:105-253
J:105-253
Biological Unit 1 (1, 240)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALPHAVIRUS_CPPS51690 Alphavirus core protein (CP) domain profile.POLS_BFV105-253
 
 
 		  240A:105-253
D:105-253
G:105-253
J:105-253

(-) Exons   (0, 0)

(no "Exon" information available for 2YEW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:171
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 
            POLS_BFV     83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeee..eeeeee..................hhhhhhhhh.ee....ee....hhhhhhh....................eee..eeeee...........eee.....eeeeeeeeee...eeeeeeee................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------ALPHAVIRUS_CP  PDB: A:105-253 UniProt: 105-253                                                                                                        PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew A   83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 


Chain B from PDB  Type:PROTEIN  Length:426
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:439
                                   810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230         
            POLS_BFV    801 YEHSTTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECSHKNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEADHAIAYQVHTASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFDHKVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNVHVPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADAHFTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAIHSHSNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITCHGKCEPPKDHIVPYAAKHNDAEFPSISTTAWQWLAHTTSGPLTILVVAIIVVVVVSIVVCARH 1239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.eeee......eee...........eeeeeeeeeee...eeeee...eeee....eee........-.....eeeeeee..................eeeeeeeeee.......-.eeee.-..eeeeeeeee....eeeeeee....eeeee..eeeee...........-eeee....eee.................ee.......ee....ee.........-...ee..hhhhhhh....ee.........eee....eee.....eeeeeee....-..........eeeeeee...........eeeeeee.........-.-..................eeee............ee..ee...-........-.......-........hhhhhhhhh-.hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew B    1 YE-STTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECS-KNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEAD-AIAYQV-TASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFD-KVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNV-VPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADA-FTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAI-S-SNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITC-GKCEPPKD-IVPYAAK-NDAEFPSISTTAWQWLA-TTSGPLTILVVAIIVVVVVSIVVCARH  439
                             | |    10        20        30        40        50        60        |-|       80        90       100       110      |120   | | 130       140       150       160       170   | | 180       190       200       210       220        |-|      240       250       260       270       280    | |290       300       310       320       330 | |   340       350       360       370     | 380    | |390  | |  400       410| |    420       430         
                             2 4                                                               69 |                                           117 |  124 |                                             174 |                                                  229 |                                                   285 |                                        330 | |                                       376 |    385 |   393 |             411 |                          
                                                                                                 71                                             119    126                                               176                                                    231                                                     287                                          332 |                                         378      387     395               413                          
                                                                                                                                                                                                                                                                                                                                                                       334                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:421
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:421
                                   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741 
            POLS_BFV    322 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  742
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....eee........eee...eeeee......eeeeee..eeeee...eeeeeeeeeee..eeeeee....eee.....eeeeee..eeeee...eeeeeeee.....eeeeeeeee.................eeeeeeee.........eeeee...eee..........eeee......eeeee.........ee...eeee.......eeeeee....................eeeee....eeeeeeee......eeeee..eeeeee.....eeeeee.......eeeeee...eeeee......eee.......eee............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew C    1 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  421
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420 


Chain D from PDB  Type:PROTEIN  Length:171
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:171
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 
            POLS_BFV     83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeee..eeeeee..................hhhhhhhhh.ee....ee....hhhhhhhh...................eee..eeeee...........ee........eeeeeeeee..eeeeeeee................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------ALPHAVIRUS_CP  PDB: D:105-253 UniProt: 105-253                                                                                                        PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew D   83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 


Chain E from PDB  Type:PROTEIN  Length:426
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:439
                                   810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230         
            POLS_BFV    801 YEHSTTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECSHKNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEADHAIAYQVHTASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFDHKVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNVHVPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADAHFTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAIHSHSNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITCHGKCEPPKDHIVPYAAKHNDAEFPSISTTAWQWLAHTTSGPLTILVVAIIVVVVVSIVVCARH 1239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.eeee......eee...........eeeeeeeeeeeeeeeeeee...eeee....eee........-.....eeeeeee..................eeeeeeeeee.......-.eeeee-eeeeeeeeeee....eeeeeee....eeeee..eeeee...........-eeee....eee.................ee.......ee....eee........-..eee...hhhhhhhhh.ee.........eee....eee.....eeeeeee....-.........eeeeeee............eeeeeeee........-.-.................eeeee.........eeeee..eeeee-........-.......-........hhhhhhhhh-.hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew E    1 YE-STTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECS-KNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEAD-AIAYQV-TASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFD-KVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNV-VPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADA-FTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAI-S-SNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITC-GKCEPPKD-IVPYAAK-NDAEFPSISTTAWQWLA-TTSGPLTILVVAIIVVVVVSIVVCARH  439
                             | |    10        20        30        40        50        60        |-|       80        90       100       110      |120   | | 130       140       150       160       170   | | 180       190       200       210       220        |-|      240       250       260       270       280    | |290       300       310       320       330 | |   340       350       360       370     | 380    | |390  | |  400       410| |    420       430         
                             2 4                                                               69 |                                           117 |  124 |                                             174 |                                                  229 |                                                   285 |                                        330 | |                                       376 |    385 |   393 |             411 |                          
                                                                                                 71                                             119    126                                               176                                                    231                                                     287                                          332 |                                         378      387     395               413                          
                                                                                                                                                                                                                                                                                                                                                                       334                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:421
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:421
                                   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741 
            POLS_BFV    322 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  742
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....eee........eee...eeeee......eeeeeeeeeeee.....eeeeeeeeee..eeeeee....eee.....eeeeeeeeeeeee...eeeeeee.......eeeeeeee.................eeeeeeee.........eeeee...ee......eee..eeee......eeee..........ee...eeee........eeeee....................eeeee....eeeeeeee......eeeee..eeeee......eeeeee.......eeeeee....eeee......eeeee.....eee...........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew F    1 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  421
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420 


Chain G from PDB  Type:PROTEIN  Length:171
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:171
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 
            POLS_BFV     83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeee..eeeeee..................hhhhhhhhheee....eee...hhhhhhhh...................eee..eeeee..........eeee.....eeeeeeeeee...eeeeeeee................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------ALPHAVIRUS_CP  PDB: G:105-253 UniProt: 105-253                                                                                                        PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew G   83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 


Chain H from PDB  Type:PROTEIN  Length:426
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:439
                                   810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230         
            POLS_BFV    801 YEHSTTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECSHKNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEADHAIAYQVHTASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFDHKVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNVHVPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADAHFTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAIHSHSNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITCHGKCEPPKDHIVPYAAKHNDAEFPSISTTAWQWLAHTTSGPLTILVVAIIVVVVVSIVVCARH 1239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.eeee......eee...........eeeeeeeeeee..eeeeee..eeeee....eee........-.....eeeeeee..................eeeeeeeeeeeee....-.eeeee-..eeeeeeeee....eeeeeee....eeeee..eeeee...........-eeee....eee...............................eee.........-...eee.hhhhhhhhhh..........eeeee....eeeee...eeeeeee....-........eee....eee..........eeeee.eee..eeee.-.-.........eeee....eeeee.........eeeee..eeeee-........-.......-........hhhhhhhhh-hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew H    1 YE-STTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECS-KNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEAD-AIAYQV-TASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFD-KVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNV-VPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADA-FTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAI-S-SNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITC-GKCEPPKD-IVPYAAK-NDAEFPSISTTAWQWLA-TTSGPLTILVVAIIVVVVVSIVVCARH  439
                             | |    10        20        30        40        50        60        |-|       80        90       100       110      |120   | | 130       140       150       160       170   | | 180       190       200       210       220        |-|      240       250       260       270       280    | |290       300       310       320       330 | |   340       350       360       370     | 380    | |390  | |  400       410| |    420       430         
                             2 4                                                               69 |                                           117 |  124 |                                             174 |                                                  229 |                                                   285 |                                        330 | |                                       376 |    385 |   393 |             411 |                          
                                                                                                 71                                             119    126                                               176                                                    231                                                     287                                          332 |                                         378      387     395               413                          
                                                                                                                                                                                                                                                                                                                                                                       334                                                                                                         


Chain I from PDB  Type:PROTEIN  Length:421
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:421
                                   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741 
            POLS_BFV    322 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  742
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhee...eee........eee...eeeeee.....eeeeeeeeee...........eeeeee..eeeeee...eeee.....eeeeeeeeeeeee......eeeee.....eeeee.....................eeeeeeee.........eeeee...........eee..eeee.....eeeeee.......eeee...eee........eeeeee....ee..............eeeee....eeeeeeee.......eee...eeeeee.....eeeeeee......eeeeee...eeeeee.....eeeee.....eee............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew I    1 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  421
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420 


Chain J from PDB  Type:PROTEIN  Length:171
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:171
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 
            POLS_BFV     83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeee..eeeeee..................hhhhhhhhh.ee....ee....hhhhhh.....................eee..eeeee.....................eeeeeeee...eeeeeeee................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------ALPHAVIRUS_CP  PDB: J:105-253 UniProt: 105-253                                                                                                        PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew J   83 PTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKPAHVKGTIDNPELAKLTFKKSSKYDLECAQVPVCMKSDASKFTHEKPEGHYNWHHGAVQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSVVTWNKDMVTRITPEESVEW  253
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 


Chain K from PDB  Type:PROTEIN  Length:426
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:439
                                   810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230         
            POLS_BFV    801 YEHSTTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECSHKNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEADHAIAYQVHTASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFDHKVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNVHVPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADAHFTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAIHSHSNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITCHGKCEPPKDHIVPYAAKHNDAEFPSISTTAWQWLAHTTSGPLTILVVAIIVVVVVSIVVCARH 1239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.eeee......eee...........eeeeeeeeeeeeeeeeeee...eeee....eee........-.....eeeeeee..................eeeeeeeeee.......-.eeeee-eeeeeeeeeee....eeeeeee.....eeee..eeeee...........-.eeee..eeee................ee.........ee...eee........-..eee..hhhhhhhhhh.ee.........eee....eee.....eeeeeee....-.........eeeeeeee...........eeeeeeee...eee..-.-..........eee.....eeee.........eeeee..eeeee-........-.......-........hhhhhhhhh-..hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew K    1 YE-STTMPNQVGIPFKALIERPGYAGLPLSLVVIKSELVPSLVQDYITCNYKTVVPSPYIKCCGGAECS-KNEADYKCSVFTGVYPFMWGGAYCFCDTENSQMSEVYVTRGESCEAD-AIAYQV-TASLKAQVMISIGELNQTVDVFVNGDSPARIQQSKFILGPISSAWSPFD-KVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTNLKLKRPASGNV-VPYTQTPSGFSYWKKEKGVPLNRNAPFGCIIKVNPVRAENCVYGNIPISMDIADA-FTRIDESPSVSLKACEVQSCTYSSDFGGVASISYTSNKVGKCAI-S-SNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITC-GKCEPPKD-IVPYAAK-NDAEFPSISTTAWQWLA-TTSGPLTILVVAIIVVVVVSIVVCARH  439
                             | |    10        20        30        40        50        60        |-|       80        90       100       110      |120   | | 130       140       150       160       170   | | 180       190       200       210       220        |-|      240       250       260       270       280    | |290       300       310       320       330 | |   340       350       360       370     | 380    | |390  | |  400       410| |    420       430         
                             2 4                                                               69 |                                           117 |  124 |                                             174 |                                                  229 |                                                   285 |                                        330 | |                                       376 |    385 |   393 |             411 |                          
                                                                                                 71                                             119    126                                               176                                                    231                                                     287                                          332 |                                         378      387     395               413                          
                                                                                                                                                                                                                                                                                                                                                                       334                                                                                                         


Chain L from PDB  Type:PROTEIN  Length:421
 aligned with POLS_BFV | P89946 from UniProtKB/Swiss-Prot  Length:1239

    Alignment length:421
                                   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741 
            POLS_BFV    322 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  742
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....eee........eee...eeeee.......eeeee..eeee.....eeeeeeeeee..eeeeee....eee.....eeeeee..eeeee......eeee.......eeee.....................eeeeeeee.........eeeee...........eee..eeee......eeeee.......eeee...eee........eeeee.....................eeeee....eeeeeeee......eeeee..eeeee......eeeeee.......eeeeee....eeeee.....eeeee.....eee...........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yew L    1 SVAHFEAYKATRPYIGWCADCGLAGSCPSPVSIEHVWSDADDGVLKIQVSMQIGIAKSNTINHAKIRYMGANGVQEAERSTLSVSTTAPCDILATMGHFILARCRPGSQVEVSLSTDPKLLCRTPFSHKPRFIGNEKSPAPTGHKTRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYKCTCGETVKEGTATNKITLFNCDTAPKCITYAVDNTVWQYNSQYVPRSEVTEVKGKIHVPFPLTDSTCAVSVAPEPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYYDLYPYWTITVLASLGLLIVISSGFSCFLCSVARTKCLTPYQLAPGAQLPTFIALLCCAKSARA  421
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YEW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YEW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YEW)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (POLS_BFV | P89946)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039619    T=4 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres.
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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  Cis Peptide Bonds
    Arg B:289 - Ile B:290   [ RasMol ]  
    Arg E:289 - Ile E:290   [ RasMol ]  
    Arg H:289 - Ile H:290   [ RasMol ]  
    Arg K:289 - Ile K:290   [ RasMol ]  
    Asp B:117 - Ala B:119   [ RasMol ]  
    Asp B:385 - Ile B:387   [ RasMol ]  
    Asp E:385 - Ile E:387   [ RasMol ]  
    Asp H:117 - Ala H:119   [ RasMol ]  
    Asp H:385 - Ile H:387   [ RasMol ]  
    Cys B:376 - Gly B:378   [ RasMol ]  
    Cys E:376 - Gly E:378   [ RasMol ]  
    Cys H:376 - Gly H:378   [ RasMol ]  
    Cys K:376 - Gly K:378   [ RasMol ]  
    Ile B:330 - Ser B:332   [ RasMol ]  
    Ile E:330 - Ser E:332   [ RasMol ]  
    Ile H:330 - Ser H:332   [ RasMol ]  
    Ile K:330 - Ser K:332   [ RasMol ]  
    Leu C:360 - Tyr C:361   [ RasMol ]  
    Leu F:360 - Tyr F:361   [ RasMol ]  
    Leu I:360 - Tyr I:361   [ RasMol ]  
    Leu L:360 - Tyr L:361   [ RasMol ]  
    Lys B:393 - Asn B:395   [ RasMol ]  
    Lys E:393 - Asn E:395   [ RasMol ]  
    Lys K:393 - Asn K:395   [ RasMol ]  
    Pro C:402 - Gly C:403   [ RasMol ]  
    Pro F:402 - Gly F:403   [ RasMol ]  
    Pro I:402 - Gly I:403   [ RasMol ]  
    Pro L:402 - Gly L:403   [ RasMol ]  
 
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  2yew
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