Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE RECOMBINANT NATIVE NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS COMPLEXED WITH NITRITE
 
Authors :  S. V. Antonyuk, N. G. H. Leferink, C. Han, D. J. Heyes, S. E. J. Rigby, M. A. R. R. Eady, N. S. Scrutton, S. S. Hasnain
Date :  06 Nov 10  (Deposition) - 18 May 11  (Release) - 18 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D,E  (1x)
Biol. Unit 2:  B,C,F  (1x)
Keywords :  Oxidoreductase, Proton Channel, Denitrification. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. G. H. Leferink, C. Han, S. V. Antonyuk, D. J. Heyes, S. E. J. Rigby, M. A. Hough, R. R. Eady, N. S. Scrutton, S. S. Hasnain
Proton-Coupled Electron Transfer In The Catalytic Cycle Of Alcaligenes Xylosoxidans Copper-Dependent Nitrite Reductase.
Biochemistry V. 50 4121 2011
PubMed-ID: 21469743  |  Reference-DOI: 10.1021/BI200246F

(-) Compounds

Molecule 1 - DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE
    Chains: A, B, C, D, E, F
    EC Number: 1.7.2.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 26-360
    Organism Scientific: ACHROMOBACTER XYLOSOXIDANS
    Organism Taxid: 85698
    Strain: IW2 IWASAKI
    Synonym: NITRITE REDUCTASE, NIR

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  DE 
Biological Unit 2 (1x):  BC  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 73)

Asymmetric Unit (5, 73)
No.NameCountTypeFull Name
1ACT11Ligand/IonACETATE ION
2CU12Ligand/IonCOPPER (II) ION
4NO2Ligand/IonNITRIC OXIDE
3NO24Ligand/IonNITRITE ION
5SO444Ligand/IonSULFATE ION
Biological Unit 1 (3, 31)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2CU-1Ligand/IonCOPPER (II) ION
4NO-1Ligand/IonNITRIC OXIDE
3NO22Ligand/IonNITRITE ION
5SO423Ligand/IonSULFATE ION
Biological Unit 2 (3, 28)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2CU-1Ligand/IonCOPPER (II) ION
4NO-1Ligand/IonNITRIC OXIDE
3NO22Ligand/IonNITRITE ION
5SO421Ligand/IonSULFATE ION

(-) Sites  (73, 73)

Asymmetric Unit (73, 73)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:89 , CYS A:130 , HIS A:139 , MET A:144BINDING SITE FOR RESIDUE CU A1337
02AC2SOFTWAREASP A:92 , HIS A:94 , HIS A:129 , NO2 A:1339 , HIS E:300BINDING SITE FOR RESIDUE CU A1338
03AC3SOFTWAREASP A:92 , HIS A:94 , HIS A:129 , CU A:1338 , HIS E:249 , ILE E:251 , HIS E:300BINDING SITE FOR RESIDUE NO2 A1339
04AC4SOFTWAREGLY A:293 , VAL A:294 , HOH A:2269 , LYS D:104BINDING SITE FOR RESIDUE SO4 A1340
05AC5SOFTWAREGLY A:134 , MET A:135 , PRO A:137 , TRP A:138 , TYR A:197 , GLU E:307BINDING SITE FOR RESIDUE ACT A1341
06AC6SOFTWAREHIS A:249 , ILE A:251 , HIS A:300 , ASP D:92 , HIS D:94 , HIS D:129 , CU D:1341BINDING SITE FOR RESIDUE NO2 A1342
07AC7SOFTWAREVAL A:14 , ALA A:15 , HOH A:2010 , HOH A:2270 , HOH A:2271 , HOH A:2272BINDING SITE FOR RESIDUE SO4 A1343
08AC8SOFTWAREHIS A:22 , GLU A:23 , GLN A:24 , HIS A:165 , HOH A:2273BINDING SITE FOR RESIDUE SO4 A1344
09AC9SOFTWAREGLN A:327 , PRO A:331 , HOH A:2274 , HOH D:2092BINDING SITE FOR RESIDUE SO4 A1345
10BC1SOFTWAREGLY A:223 , HIS A:313BINDING SITE FOR RESIDUE SO4 A1346
11BC2SOFTWAREPRO A:152 , ARG A:153 , ASP A:154 , HOH A:2125 , HOH A:2275BINDING SITE FOR RESIDUE SO4 A1347
12BC3SOFTWAREGLY A:223 , ALA A:224BINDING SITE FOR RESIDUE SO4 A1348
13BC4SOFTWAREGLY B:134 , MET B:135 , VAL B:136 , PRO B:137 , HOH B:2223 , ARG E:336 , HOH E:2266 , PHE F:306BINDING SITE FOR RESIDUE ACT B1337
14BC5SOFTWAREHIS B:89 , CYS B:130 , HIS B:139 , MET B:144BINDING SITE FOR RESIDUE CU B1338
15BC6SOFTWAREASP B:92 , HIS B:94 , HIS B:129 , NO2 B:1341 , HIS F:300BINDING SITE FOR RESIDUE CU B1339
16BC7SOFTWAREGLU B:23 , GLN B:24 , HIS B:165BINDING SITE FOR RESIDUE SO4 B1340
17BC8SOFTWAREASP B:92 , HIS B:94 , HIS B:129 , CU B:1339 , HIS F:249 , ILE F:251 , HIS F:300BINDING SITE FOR RESIDUE NO2 B1341
18BC9SOFTWAREGLY B:134 , MET B:135 , PRO B:137 , TRP B:138 , TYR B:197 , GLU F:307BINDING SITE FOR RESIDUE ACT B1342
19CC1SOFTWAREASP B:121 , ARG B:122 , HOH B:2058 , HOH B:2224 , ARG F:270 , LYS F:290 , SO4 F:1340BINDING SITE FOR RESIDUE ACT B1343
20CC2SOFTWAREVAL B:14 , ALA B:15 , HOH B:2225 , HOH B:2226BINDING SITE FOR RESIDUE SO4 B1344
21CC3SOFTWAREARG B:270 , HOH B:2227 , HOH B:2228 , HOH B:2229BINDING SITE FOR RESIDUE SO4 B1345
22CC4SOFTWAREGLY B:223 , HIS B:313BINDING SITE FOR RESIDUE SO4 B1346
23CC5SOFTWARESER B:28 , LYS B:31 , HOH B:2230BINDING SITE FOR RESIDUE SO4 B1347
24CC6SOFTWAREPRO B:152 , ARG B:153 , ASP B:154 , HOH B:2101 , HOH B:2231BINDING SITE FOR RESIDUE SO4 B1348
25CC7SOFTWAREGLN B:327 , PRO B:331 , HOH B:2232 , HOH C:2090BINDING SITE FOR RESIDUE SO4 B1349
26CC8SOFTWAREGLY B:293 , VAL B:294 , HOH B:2233 , LYS C:104BINDING SITE FOR RESIDUE SO4 B1350
27CC9SOFTWAREGLU B:307 , MET C:135 , PRO C:137 , TRP C:138 , TYR C:197BINDING SITE FOR RESIDUE ACT C1337
28DC1SOFTWAREHIS C:89 , CYS C:130 , HIS C:139 , MET C:144BINDING SITE FOR RESIDUE CU C1338
29DC2SOFTWAREHIS B:300 , ASP C:92 , HIS C:94 , HIS C:129 , NO C:1347BINDING SITE FOR RESIDUE CU C1339
30DC3SOFTWAREARG C:270 , HOH C:2202BINDING SITE FOR RESIDUE SO4 C1341
31DC4SOFTWAREALA C:15 , HOH C:2014 , HOH C:2019 , HOH C:2252BINDING SITE FOR RESIDUE SO4 C1342
32DC5SOFTWAREGLY C:293 , VAL C:294 , HOH C:2253 , HOH C:2254 , HOH C:2255 , LYS F:104BINDING SITE FOR RESIDUE SO4 C1343
33DC6SOFTWAREGLN C:327 , HOH C:2248 , HOH C:2256 , HOH C:2257BINDING SITE FOR RESIDUE SO4 C1344
34DC7SOFTWAREGLN C:24 , HIS C:165BINDING SITE FOR RESIDUE SO4 C1345
35DC8SOFTWAREARG C:153 , ASP C:154 , HOH C:2258BINDING SITE FOR RESIDUE SO4 C1346
36DC9SOFTWAREHIS B:249 , ILE B:251 , HIS B:300 , ASP C:92 , HIS C:94 , HIS C:129 , CU C:1339BINDING SITE FOR RESIDUE NO C1347
37EC1SOFTWAREGLY D:223 , HIS D:313 , HOH D:2250BINDING SITE FOR RESIDUE SO4 D1337
38EC2SOFTWAREGLU A:307 , GLY D:134 , MET D:135 , PRO D:137 , TRP D:138 , TYR D:197 , MET D:204BINDING SITE FOR RESIDUE ACT D1338
39EC3SOFTWARELYS D:104 , ASN D:107 , HOH D:2093 , HOH D:2112BINDING SITE FOR RESIDUE ACT D1339
40EC4SOFTWAREHIS D:89 , CYS D:130 , HIS D:139 , MET D:144BINDING SITE FOR RESIDUE CU D1340
41EC5SOFTWAREHIS A:300 , NO2 A:1342 , HIS D:94 , HIS D:129BINDING SITE FOR RESIDUE CU D1341
42EC6SOFTWAREGLY D:293 , VAL D:294 , HOH D:2251 , LYS E:104BINDING SITE FOR RESIDUE SO4 D1343
43EC7SOFTWAREARG D:270 , ACT E:1339 , HOH E:2268BINDING SITE FOR RESIDUE SO4 D1344
44EC8SOFTWAREGLN D:327 , PRO D:331 , HOH D:2253 , HOH E:2097BINDING SITE FOR RESIDUE SO4 D1345
45EC9SOFTWAREARG A:270 , ASP A:271 , LYS A:290 , ASP D:121 , ARG D:122 , HOH D:2254 , HOH D:2255BINDING SITE FOR RESIDUE SO4 D1346
46FC1SOFTWARELYS D:42 , MET D:44 , HOH D:2256 , HOH D:2257BINDING SITE FOR RESIDUE SO4 D1347
47FC2SOFTWAREHIS D:22 , GLU D:23 , GLN D:24 , HIS D:165 , HOH D:2258 , HOH D:2259 , HOH D:2260BINDING SITE FOR RESIDUE SO4 D1348
48FC3SOFTWAREPRO D:152 , ARG D:153 , ASP D:154 , HOH D:2122 , HOH D:2261BINDING SITE FOR RESIDUE SO4 D1349
49FC4SOFTWAREVAL D:14 , ALA D:15 , HOH D:2013 , HOH D:2015BINDING SITE FOR RESIDUE SO4 D1350
50FC5SOFTWAREGLU D:307 , GLY E:134 , MET E:135 , PRO E:137 , TRP E:138 , TYR E:197BINDING SITE FOR RESIDUE ACT E1337
51FC6SOFTWAREARG C:336 , PHE D:306 , GLY E:134 , MET E:135 , VAL E:136 , PRO E:137 , HOH E:2267BINDING SITE FOR RESIDUE ACT E1338
52FC7SOFTWAREARG D:270 , LYS D:290 , SO4 D:1344 , ASP E:121 , ARG E:122 , HOH E:2268 , HOH E:2269BINDING SITE FOR RESIDUE ACT E1339
53FC8SOFTWAREHIS E:89 , CYS E:130 , HIS E:139 , MET E:144BINDING SITE FOR RESIDUE CU E1340
54FC9SOFTWAREHIS D:300 , ASP E:92 , HIS E:94 , HIS E:129 , NO E:1349BINDING SITE FOR RESIDUE CU E1341
55GC1SOFTWAREHIS E:22 , GLU E:23 , GLN E:24 , HIS E:165 , HOH E:2270 , HOH E:2271BINDING SITE FOR RESIDUE SO4 E1342
56GC2SOFTWAREARG E:270 , HOH E:2272BINDING SITE FOR RESIDUE SO4 E1343
57GC3SOFTWAREVAL E:14 , ALA E:15BINDING SITE FOR RESIDUE SO4 E1344
58GC4SOFTWARESER E:28 , GLY E:29 , LYS E:31 , HOH E:2274BINDING SITE FOR RESIDUE SO4 E1345
59GC5SOFTWAREHOH A:2099 , GLN E:327 , PRO E:331 , HOH E:2262 , HOH E:2275BINDING SITE FOR RESIDUE SO4 E1346
60GC6SOFTWAREARG E:153 , ASP E:154 , HOH E:2276BINDING SITE FOR RESIDUE SO4 E1347
61GC7SOFTWARELYS A:104 , GLY E:293 , VAL E:294 , HOH E:2277BINDING SITE FOR RESIDUE SO4 E1348
62GC8SOFTWAREHIS D:249 , ILE D:251 , HIS D:300 , ASP E:92 , HIS E:94 , HIS E:129 , CU E:1341BINDING SITE FOR RESIDUE NO E1349
63GC9SOFTWAREGLU C:307 , GLY F:134 , MET F:135 , PRO F:137 , TRP F:138 , TYR F:197BINDING SITE FOR RESIDUE ACT F1336
64HC1SOFTWAREHIS F:89 , CYS F:130 , HIS F:139 , MET F:144BINDING SITE FOR RESIDUE CU F1337
65HC2SOFTWAREHIS C:300 , HIS F:94 , HIS F:129 , NO2 F:1339BINDING SITE FOR RESIDUE CU F1338
66HC3SOFTWAREHIS C:249 , ILE C:251 , HIS C:300 , ASP F:92 , HIS F:94 , HIS F:129 , CU F:1338BINDING SITE FOR RESIDUE NO2 F1339
67HC4SOFTWAREACT B:1343 , HOH B:2224 , ARG F:270 , HOH F:2258 , HOH F:2259BINDING SITE FOR RESIDUE SO4 F1340
68HC5SOFTWARELYS B:104 , GLY F:293 , VAL F:294 , HOH F:2260BINDING SITE FOR RESIDUE SO4 F1341
69HC6SOFTWAREPRO F:152 , ARG F:153 , ASP F:154 , HOH F:2262BINDING SITE FOR RESIDUE SO4 F1342
70HC7SOFTWAREHOH B:2082 , GLN F:327 , PRO F:331 , HOH F:2254BINDING SITE FOR RESIDUE SO4 F1343
71HC8SOFTWAREVAL F:14 , ALA F:15BINDING SITE FOR RESIDUE SO4 F1344
72HC9SOFTWAREHIS F:22 , GLU F:23 , GLN F:24 , HIS F:165 , HOH F:2266BINDING SITE FOR RESIDUE SO4 F1345
73IC1SOFTWAREGLY F:223 , HIS F:313 , LYS F:315BINDING SITE FOR RESIDUE SO4 F1346

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XWZ)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Pro A:16 -Pro A:17
2Met A:62 -Pro A:63
3Pro B:16 -Pro B:17
4Met B:62 -Pro B:63
5Pro C:16 -Pro C:17
6Met C:62 -Pro C:63
7Pro D:16 -Pro D:17
8Met D:62 -Pro D:63
9Pro E:16 -Pro E:17
10Met E:62 -Pro E:63
11Pro F:16 -Pro F:17
12Met F:62 -Pro F:63

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XWZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XWZ)

(-) Exons   (0, 0)

(no "Exon" information available for 2XWZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
 aligned with O68601_ALCXX | O68601 from UniProtKB/TrEMBL  Length:360

    Alignment length:335
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355     
         O68601_ALCXX    26 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 360
               SCOP domains d2xwza1 A:2-159 Nitrite reductase, NIR                                                                                                                        d2xwza2 A:160-336 Nitrite reductase, NIR                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee.....................eeeeeeeeeeeeee......eeeeeee........eeee...eeeeeeee..........ee....hhhhhhhhh.....eeeeeeee....eeeeee.....hhhhhhhh..eeeeeee....ee.....ee...eeeeeeeeee...............hhhhhhhhhhhhhh....eeee.......hhhhheeee...eeeeeeee......eee....eeeee.........eeee........eeeeeeee....eeeeeee.hhhhhhh...eeeeeee.......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xwz A   2 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 336
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331     


Chain B from PDB  Type:PROTEIN  Length:335
 aligned with O68601_ALCXX | O68601 from UniProtKB/TrEMBL  Length:360

    Alignment length:335
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355     
         O68601_ALCXX    26 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 360
               SCOP domains d2xwzb1 B:2-159 Nitrite reductase, NIR                                                                                                                        d2xwzb2 B:160-336 Nitrite reductase, NIR                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee.....................eeeeeeeeeeeeee......eeeeeee........eeee...eeeeeeee..........ee....hhhhhhhhh.....eeeeeeee....eeeeee.....hhhhhhhh..eeeeeee................eeeeeeeeee...............hhhhhhhhhhhhhh....eeee.......hhhhheeee...eeeeeeee......eee....eeeee.........eeee........eeeeeeee....eeeeeee.hhhhhhh...eeeeeee.......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xwz B   2 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 336
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331     


Chain C from PDB  Type:PROTEIN  Length:335
 aligned with O68601_ALCXX | O68601 from UniProtKB/TrEMBL  Length:360

    Alignment length:335
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355     
         O68601_ALCXX    26 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 360
               SCOP domains d2xwzc1 C:2-159 Nitrite reductase, NIR                                                                                                                        d2xwzc2 C:160-336 Nitrite reductase, NIR                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee.....................eeeeeeeeeeeeee......eeeeeee........eeee...eeeeeeee..........ee....hhhhhhhhh.....eeeeeeee....eeeeee.....hhhhhhhh..eeeeeee....ee.....ee...eeeeeeeeee...............hhhhhhhhhhhhhh....eeee.......hhhhheeee...eeeeeeee......eee....eeeee.........eeee........eeeeeeee....eeeeeee.hhhhhhh...eeeeeee.......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xwz C   2 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 336
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331     


Chain D from PDB  Type:PROTEIN  Length:335
 aligned with O68601_ALCXX | O68601 from UniProtKB/TrEMBL  Length:360

    Alignment length:335
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355     
         O68601_ALCXX    26 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 360
               SCOP domains d2xwzd1 D:2-159 Nitrite reductase, NIR                                                                                                                        d2xwzd2 D:160-336 Nitrite reductase, NIR                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee.....................eeeeeeeeeeeeee......eeeeeee........eeee...eeeeeeee..........ee....hhhhhhhhh.....eeeeeeee....eeeeee.....hhhhhhhh..eeeeeee....ee.....ee...eeeeeeeeee..............hhhhhhhhhhhhhhh....eeee.......hhhhheeee...eeeeeeee......eeee...eeeee.........eeee........eeeeeeee....eeeeeee.hhhhhhh...eeeeeee.......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xwz D   2 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 336
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331     


Chain E from PDB  Type:PROTEIN  Length:335
 aligned with O68601_ALCXX | O68601 from UniProtKB/TrEMBL  Length:360

    Alignment length:335
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355     
         O68601_ALCXX    26 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 360
               SCOP domains d2xwze1 E:2-159 Nitrite reductase, NIR                                                                                                                        d2xwze2 E:160-336 Nitrite reductase, NIR                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee.....................eeeeeeeeeeeeee......eeeeeee........eeee...eeeeeeee..........ee....hhhhhhhhh.....eeeeeeee....eeeeee.....hhhhhhhh..eeeeeee....ee.....ee...eeeeeeeeee...............hhhhhhhhhhhhhh....eeee.......hhhhheeee...eeeeeeee......eeee...eeeee.........eeee........eeeeeeee....eeeeeee.hhhhhhh...eeeeeee.......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xwz E   2 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIPR 336
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331     


Chain F from PDB  Type:PROTEIN  Length:334
 aligned with O68601_ALCXX | O68601 from UniProtKB/TrEMBL  Length:360

    Alignment length:334
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355    
         O68601_ALCXX    26 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIP 359
               SCOP domains d2xwzf1 F:2-159 Nitrite reductase, NIR                                                                                                                        d2xwzf2 F:160-335 Nitrite reductase, NIR                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------Cu-oxidase_3-2xwzF07 F:38-155                                                                                         ------------Cu-oxidase-2xwzF01 F:168-320                                                                                                                             --------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------Cu-oxidase_3-2xwzF08 F:38-155                                                                                         ------------Cu-oxidase-2xwzF02 F:168-320                                                                                                                             --------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------Cu-oxidase_3-2xwzF09 F:38-155                                                                                         ------------Cu-oxidase-2xwzF03 F:168-320                                                                                                                             --------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------Cu-oxidase_3-2xwzF10 F:38-155                                                                                         ------------Cu-oxidase-2xwzF04 F:168-320                                                                                                                             --------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------Cu-oxidase_3-2xwzF11 F:38-155                                                                                         ------------Cu-oxidase-2xwzF05 F:168-320                                                                                                                             --------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------Cu-oxidase_3-2xwzF12 F:38-155                                                                                         ------------Cu-oxidase-2xwzF06 F:168-320                                                                                                                             --------------- Pfam domains (6)
         Sec.struct. author hhhhh.eee.....................eeeeeeeeeeeeee......eeeeeee........eeee...eeeeeeee..........ee....hhhhhhhhh.....eeeeeeee....eeeeee.....hhhhhhhh..eeeeeee....ee.....ee...eeeeeeeeee...............hhhhhhhhhhhhhh....eeee.......hhhhheeee...eeeeeeee......eeee...eeeee.........eeee........eeeeeeee....eeeeeee.hhhhhhh...eeeeeee.......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xwz F   2 DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIP 335
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: Cupredoxin-like (545)
(-)
Superfamily: Cupredoxins (543)
(-)
Family: Multidomain cupredoxins (146)
(-)
Protein domain: Nitrite reductase, NIR (79)
(-)
Alcaligenes xylosoxidans [TaxId: 85698] (23)
1ad2xwza1A:2-159
1bd2xwza2A:160-336
1cd2xwzb1B:2-159
1dd2xwzb2B:160-336
1ed2xwzc1C:2-159
1fd2xwzc2C:160-336
1gd2xwzd1D:2-159
1hd2xwzd2D:160-336
1id2xwze1E:2-159
1jd2xwze2E:160-336
1kd2xwzf1F:2-159
1ld2xwzf2F:160-335

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XWZ)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: CU_oxidase (192)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (O68601_ALCXX | O68601)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0050421    nitrite reductase (NO-forming) activity    Catalysis of the reaction: nitric oxide + H2O + ferricytochrome c = nitrite + ferrocytochrome c + 2 H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006807    nitrogen compound metabolic process    The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NO2  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
    GC4  [ RasMol ]  +environment [ RasMol ]
    GC5  [ RasMol ]  +environment [ RasMol ]
    GC6  [ RasMol ]  +environment [ RasMol ]
    GC7  [ RasMol ]  +environment [ RasMol ]
    GC8  [ RasMol ]  +environment [ RasMol ]
    GC9  [ RasMol ]  +environment [ RasMol ]
    HC1  [ RasMol ]  +environment [ RasMol ]
    HC2  [ RasMol ]  +environment [ RasMol ]
    HC3  [ RasMol ]  +environment [ RasMol ]
    HC4  [ RasMol ]  +environment [ RasMol ]
    HC5  [ RasMol ]  +environment [ RasMol ]
    HC6  [ RasMol ]  +environment [ RasMol ]
    HC7  [ RasMol ]  +environment [ RasMol ]
    HC8  [ RasMol ]  +environment [ RasMol ]
    HC9  [ RasMol ]  +environment [ RasMol ]
    IC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Met A:62 - Pro A:63   [ RasMol ]  
    Met B:62 - Pro B:63   [ RasMol ]  
    Met C:62 - Pro C:63   [ RasMol ]  
    Met D:62 - Pro D:63   [ RasMol ]  
    Met E:62 - Pro E:63   [ RasMol ]  
    Met F:62 - Pro F:63   [ RasMol ]  
    Pro A:16 - Pro A:17   [ RasMol ]  
    Pro B:16 - Pro B:17   [ RasMol ]  
    Pro C:16 - Pro C:17   [ RasMol ]  
    Pro D:16 - Pro D:17   [ RasMol ]  
    Pro E:16 - Pro E:17   [ RasMol ]  
    Pro F:16 - Pro F:17   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2xwz
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  O68601_ALCXX | O68601
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  1.7.2.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  O68601_ALCXX | O68601
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O68601_ALCXX | O68601: 1bq5 1gs6 1gs7 1gs8 1hau 1haw 1ndt 1oe1 1oe2 1oe3 1wa0 1wa1 1wa2 1wae 2bo0 2bp0 2bp8 2jfc 2vm3 2vm4 2vmj 2vn3 2vw4 2vw6 2vw7 2xx0 2xx1 2xxf 2xxg 2zon 4csp 4csz 5b1j 5b1k

(-) Related Entries Specified in the PDB File

1bq5 NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051
1gs6 CRYSTAL STRUCTURE OF M144A MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE
1gs7 CRYSTAL STRUCTURE OF H254F MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE
1gs8 CRYSTAL STRUCTURE OF M144A MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE
1hau X-RAY STRUCTURE OF A BLUE COPPER NITRITE REDUCTASE AT HIGH PH AND IN COPPER FREE FORM AT 1.9E RESOLUTION
1haw X-RAY STRUCTURE OF A BLUE COPPER NITRITE REDUCTASE AT HIGH PH AND IN COPPER FREE FORM AT 1.9E RESOLUTION
1ndt NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
1oe1 ATOMIC RESOLUTION STRUCTURE OF THE WILDTYPE NATIVE NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
1oe2 ATOMIC RESOLUTION STRUCTURE OF D92E MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE
1oe3 ATOMIC RESOLUTION STRUCTURE OF 'HALF APO' NIR
1wa0 CRYSTAL STRUCTURE OF W138H MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE
1wa1 CRYSTAL STRUCTURE OF H313Q MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE
1wa2 CRYSTAL STRUCTURE OF H313Q MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE WITH NITRITE BOUND
1wae CRYSTAL STRUCTURE OF H129V MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE
2bo0 CRYSTAL STRUCTURE OF THE C130A MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
2bp0 M144L MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
2bp8 M144Q STRUCTURE OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
2jfc M144L MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS IN SPACE GROUP P212121
2jl0 STRUCTURE OF THE N90S MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
2jl3 CRYSTAL STRUCTURE OF THE CU METALLATED H254F MUTANT OF ALCALIGENES XYLOSOXIDANS CU NITRITE REDUCTASE
2vm3 STRUCTURE OF ALCALIGENES XYLOSOXIDANS IN SPACE GROUP R3 - 1 OF 2
2vm4 STRUCTURE OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE IN SPACE GROUP R3 - 2 OF 2
2vmj TYPE 1 COPPER-BINDING LOOP OF NITRITE REDUCTASE MUTANT: 130-CAPEGMVPWHVVSGM-144 TO 130-CTPHPFM-136
2vn3 NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
2vw4 NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS - 2 OF 3
2vw6 NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS - 3 OF 3
2vw7 NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS - 1 OF 3
2xx0 STRUCTURE OF THE N90S-H254F MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
2xx1 STRUCTURE OF THE N90S MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS COMPLEXED WITH NITRITE
2xxf CU METALLATED H254F MUTANT OF NITRITE REDUCTASE
2xxg STRUCTURE OF THE N90S MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS