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(-) Description

Title :  4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA
 
Authors :  D. K. Clare, E. V. Orlova
Date :  12 May 10  (Deposition) - 30 Jun 10  (Release) - 04 Aug 10  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.60
Chains :  Asym. Unit :  A,R
Biol. Unit 1:  A,R  (49x)
Keywords :  Virus, Single Particle Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. K. Clare, E. V. Orlova
4. 6 A Cryo-Em Reconstruction Of Tobacco Mosaic Virus From Images Recorded At 300 Kev On A 4Kx4K Ccd Camera.
J. Struct. Biol. V. 171 303 2010
PubMed-ID: 20558300  |  Reference-DOI: 10.1016/J.JSB.2010.06.011

(-) Compounds

Molecule 1 - TOBACCO MOSAIC VIRUS
    Chains: A
    Fragment: CP, RESIDUES 2-159
    Organism Scientific: TOBACCO MOSAIC VIRUS
    Organism Taxid: 12242
 
Molecule 2 - 5'-(*GP*AP*AP)-3'
    Chains: R
    Organism Scientific: TOBACCO MOSAIC VIRUS
    Organism Taxid: 12242

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AR
Biological Unit 1 (49x): AR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2XEA)

(-) Sites  (0, 0)

(no "Site" information available for 2XEA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XEA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser A:55 -Pro A:56
2Ser A:148 -Gly A:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:154
 aligned with Q77LT8_9VIRU | Q77LT8 from UniProtKB/TrEMBL  Length:159

    Alignment length:154
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151    
         Q77LT8_9VIRU     2 SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 155
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains TMV_coat-2xeaA01 A:1-145                                                                                                                         --------- Pfam domains
         Sec.struct. author .......hhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..............eee......hhhhhhhhhhhh....hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xea A   1 SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    


Chain R from PDB  Type:RNA  Length:3
                                   
                 2xea R   4 GAA   6
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XEA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XEA)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: TMV_coat] (6)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q77LT8_9VIRU | Q77LT8)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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    Ser A:148 - Gly A:149   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q77LT8_9VIRU | Q77LT8: 2om3

(-) Related Entries Specified in the PDB File

2om3 HIGH-RESOLUTION CRYO-EM STRUCTURE OF TOBACCO MOSAIC VIRUS