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(-) Description

Title :  3D STRUCTURE OF TET3 FROM PYROCOCCUS HORIKOSHII
 
Authors :  E. Rosenbaum, M. A. Dura, F. M. Vellieux, B. Franzetti
Date :  01 Dec 09  (Deposition) - 03 Nov 10  (Release) - 03 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Protease, Hydrolase, Thermophilic, Self-Compartmentalising (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Dura, E. Rosenbaum, A. Larabi, F. Gabel, F. M. Vellieux, B. Franzetti
The Structural And Biochemical Characterizations Of A Novel Tet Peptidase Complex From Pyrococcus Horikoshii Reveal An Integrated Peptide Degradation System In Hyperthermophilic Archaea.
Mol. Microbiol. V. 72 26 2009
PubMed-ID: 19291145  |  Reference-DOI: 10.1111/J.1365-2958.2009.06600.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 354AA LONG HYPOTHETICAL OPERON PROTEIN FRV
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(RIL)
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953
    Synonym: TET3

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL24Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:109 , THR A:163 , VAL A:164 , HOH A:2215BINDING SITE FOR RESIDUE GOL A 360
2AC2SOFTWAREARG A:173BINDING SITE FOR RESIDUE GOL A 361
3AC3SOFTWAREASP A:185 , GLU A:216 , HIS A:322 , ZN A:402 , CL A:405 , HOH A:2216BINDING SITE FOR RESIDUE ZN A 401
4AC4SOFTWAREHIS A:71 , ASP A:185 , ASP A:238 , ZN A:401 , CL A:405BINDING SITE FOR RESIDUE ZN A 402
5AC5SOFTWAREHIS A:71 , ASP A:185 , GLU A:215 , GLU A:216 , ASP A:238 , ZN A:401 , ZN A:402 , HOH A:2135 , HOH A:2216BINDING SITE FOR RESIDUE CL A 405
6AC6SOFTWAREARG A:65BINDING SITE FOR RESIDUE CL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WZN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser A:63 -Pro A:64
2Asp A:185 -Asp A:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WZN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WZN)

(-) Exons   (0, 0)

(no "Exon" information available for 2WZN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:338
 aligned with O59485_PYRHO | O59485 from UniProtKB/TrEMBL  Length:354

    Alignment length:347
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       
         O59485_PYRHO     8 SMVDWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDKLGNVIAHFKGSSPRIMVAAHMDKIGVMVNHIDKDGYLHIVPIGGVLPETLVAQRIRFFTEKGERYGVVGVLPPHLRRGQEDKGSKIDWDQIVVDVGASSKEEAEEMGFRVGTVGEFAPNFTRLNEHRFATPYLDDRICLYAMIEAARQLGDHEADIYIVGSVQEEVGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVGPNINPKLRAFADEVAKKYEIPLQVEPSPRPTGTDANVMQINREGVATAVLSIPIRYMHSQVELADARDVDNTIKLAKALLEELKPMDFTP 354
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------Peptidase_M42-2wznA01 A:53-339                                                                                                                                                                                                                                                                 --------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh.....hhhhhhhhhhhhhhhh...eeee.....eeeee.....eeeeeee....eeeeeee.....eeeeee...hhhhhh..eeeeee..eeeeeee...hhhhh---------.hhhhh.ee....hhhhhhhh......eeee....ee....eee..hhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeee..................eeee....hhhhhhhhhhhhhhh....eeee.......hhhhhhh.....eeeeeeeee........eeehhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wzn A   8 SMVDWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDKLGNVIAHFKGSSPRIMVAAHMDKIGVMVNHIDKDGYLHIVPIGGVLPETLVAQRIRFFTEKGERYGVVGVLPPHLR---------IDWDQIVVDVGASSKEEAEEMGFRVGTVGEFAPNFTRLNEHRFATPYLDDRICLYAMIEAARQLGDHEADIYIVGSVQEEVGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVGPNINPKLRAFADEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVATAVLSIPIRYMHSQVELADARDVDNTIKLAKALLEELKPMDFTP 354
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       
                                                                                                                                                 127       137
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WZN)

(-) CATH Domains  (0, 0 ; only for superseded entry 2VPU: 2,2)

(no "CATH Domain" information available for 2WZN, only for superseded entry 2VPU replaced by 2WZN)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Peptidase_MH (119)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (O59485_PYRHO | O59485)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  2wzn
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O59485_PYRHO | O59485: 2pe3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2WZN)