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(-) Description

Title :  TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB IN COMPLEX WITH SULFATE
 
Authors :  V. Sauve, P. Roversi, K. J. Leath, E. F. Garman, R. Antrobus, S. M. Lea, B. C. Berks
Date :  24 Mar 09  (Deposition) - 16 Jun 09  (Release) - 03 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Keywords :  Sulfur-Sulfur Hydrolysis, Sulfur Oxidation Pathway, Sox, Soxb, Cys S-Thiosulfonate, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Sauve, P. Roversi, K. J. Leath, E. F. Garman, R. Antrobus, S. M. Lea, B. C. Berks
Mechanism For The Hydrolysis Of A Sulfur-Sulfur Bond Based On The Crystal Structure Of The Thiosulfohydrolase Soxb.
J. Biol. Chem. V. 284 21707 2009
PubMed-ID: 19535341  |  Reference-DOI: 10.1074/JBC.M109.002709

(-) Compounds

Molecule 1 - SULFUR OXIDATION PROTEIN SOXB
    ChainsA
    EC Number3.12.2.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPVS048
    Expression System StrainROSETTA 2
    Expression System Taxid562
    Expression System VariantDE3
    Expression System VectorPQE80L
    FragmentRESIDUES 24-573
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid262724
    Other DetailsTHERMUS THERMOPHILUS HB27 SOXB
    StrainHB27
    SynonymSOXB

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MN2Ligand/IonMANGANESE (II) ION
3SO41Ligand/IonSULFATE ION
4TBU3Ligand/IonTERTIARY-BUTYL ALCOHOL
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MN-1Ligand/IonMANGANESE (II) ION
3SO41Ligand/IonSULFATE ION
4TBU3Ligand/IonTERTIARY-BUTYL ALCOHOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:402 , ALA A:455 , ASP A:459 , SER A:547 , HOH A:2538BINDING SITE FOR RESIDUE ACT A1574
2AC2SOFTWAREPRO A:92BINDING SITE FOR RESIDUE TBU A1575
3AC3SOFTWARELEU A:152BINDING SITE FOR RESIDUE TBU A1576
4AC4SOFTWARELYS A:234 , SER A:246 , PHE A:247 , ALA A:248 , HOH A:2275 , HOH A:2276BINDING SITE FOR RESIDUE TBU A1577
5AC5SOFTWAREHIS A:49 , ASP A:143 , HIS A:174 , TRP A:175 , HIS A:297 , HIS A:299 , ARG A:416 , TRP A:417 , MN A:1580 , MN A:1581 , HOH A:2414 , HOH A:2589 , HOH A:2590 , HOH A:2591BINDING SITE FOR RESIDUE SO4 A1578
6AC6SOFTWAREASP A:47 , HIS A:49 , ASP A:143 , HIS A:299 , SO4 A:1578 , MN A:1581 , HOH A:2591BINDING SITE FOR RESIDUE MN A1580
7AC7SOFTWAREASP A:143 , HIS A:174 , HIS A:274 , HIS A:297 , SO4 A:1578 , MN A:1580 , HOH A:2591BINDING SITE FOR RESIDUE MN A1581

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WDD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WDD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WDD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WDD)

(-) Exons   (0, 0)

(no "Exon" information available for 2WDD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:543
 aligned with Q72IT0_THET2 | Q72IT0 from UniProtKB/TrEMBL  Length:573

    Alignment length:543
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570   
         Q72IT0_THET2    31 LYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG 573
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------5_nucleotid_C-2wddA01 A:374-525                                                                                                                         ------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeeee....................hhhhh......hhhhhhhhhh....hhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhh.hhhhhhhhhhhh..ee..hhhhhhhhhhhhhhhhhh..ee.....ee..........eeeeee..eeeeeeee...hhhhhhhhhhhh.ee...hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhh......eeee..........eee..eeeee......eeeeeeeeee..eeeeeeeeeee..hhhh..hhhhhhhhhhhhh.hhhhhhh..eee...........hhhhhhhhhhhhhhh....eeee.............eehhhhhhhhhh....eeeeeeeehhhhhhhhhhhhhhhh.............eee.eeeee.........eeeeee..ee.....eeeeeee..hhhhhhee......eehhhhhhhhhhhhhee.......eee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wdd A  31 LYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG 573
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WDD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WDD)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q72IT0_THET2 | Q72IT0)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009166    nucleotide catabolic process    The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q72IT0_THET2 | Q72IT02wdc 2wde 2wdf 4uwq

(-) Related Entries Specified in the PDB File

2wdc TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB IN COMPLEX WITH GLYCEROL
2wde TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB IN COMPLEX WITH THIOSULFATE
2wdf TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB