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(-) Description

Title :  STRUCTURAL AND SPECTROSCOPIC CHARACTERIZATION OF PHOTOCONVERTING FLUORESCENT PROTEIN DENDRA2
 
Authors :  V. Adam, K. Nienhaus, D. Bourgeois, G. U. Nienhaus
Date :  06 Aug 08  (Deposition) - 09 Jun 09  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Fluorescent Protein, Photoactivation, Gfp-Like Protein, Dendra2 (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Adam, K. Nienhaus, D. Bourgeois, G. U. Nienhaus
Structural Basis Of Enhanced Photoconversion Yield In Green Fluorescent Protein-Like Protein Dendra2.
Biochemistry V. 48 4905 2009
PubMed-ID: 19371086  |  Reference-DOI: 10.1021/BI900383A

(-) Compounds

Molecule 1 - GREEN FLUORESCENT PROTEIN
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE30
    Expression System StrainM15PREP4
    Expression System Taxid562
    Organism ScientificDENDRONEPHTHYA SP. SSAL-2002
    Organism Taxid191210
    SynonymDENDRA2

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CR88Mod. Amino Acid2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2GOL2Ligand/IonGLYCEROL
3PG42Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1CR82Mod. Amino Acid2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2GOL1Ligand/IonGLYCEROL
3PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1CR82Mod. Amino Acid2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2GOL1Ligand/IonGLYCEROL
3PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CR82Mod. Amino Acid2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2GOL-1Ligand/IonGLYCEROL
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1CR82Mod. Amino Acid2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2GOL-1Ligand/IonGLYCEROL
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:217 , SER A:218 , PRO A:219 , PRO A:221 , HOH A:2181 , HOH A:2184 , ARG B:194 , PRO F:126BINDING SITE FOR RESIDUE PG4 A1226
2AC2SOFTWAREARG A:149 , GLY B:167 , HIS B:168 , HOH B:2186 , HOH B:2187 , HOH B:2188 , HOH B:2189 , HIS C:228BINDING SITE FOR RESIDUE GOL B1228
3AC3SOFTWAREGLU C:96 , HIS C:168 , HOH C:2180 , HOH C:2181 , HOH C:2182 , HOH C:2183BINDING SITE FOR RESIDUE GOL C1229
4AC4SOFTWAREARG C:194 , HOH C:2109 , TYR D:217 , SER D:218 , PRO D:219 , PRO D:221 , HOH D:2148BINDING SITE FOR RESIDUE PG4 D1226

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VZX)

(-) Cis Peptide Bonds  (20, 20)

Asymmetric Unit
No.Residues
1Ala A:48 -Pro A:49
2Phe A:83 -Pro A:84
3Ala B:48 -Pro B:49
4Phe B:83 -Pro B:84
5Ala C:48 -Pro C:49
6Phe C:83 -Pro C:84
7Asn D:2 -Leu D:3
8Ala D:48 -Pro D:49
9Phe D:83 -Pro D:84
10Ala E:48 -Pro E:49
11Phe E:83 -Pro E:84
12Ala F:48 -Pro F:49
13Phe F:83 -Pro F:84
14Ala G:48 -Pro G:49
15Phe G:83 -Pro G:84
16Ser G:202 -Asp G:203
17Val G:224 -Trp G:225
18Ala H:48 -Pro H:49
19Phe H:83 -Pro H:84
20His H:227 -His H:228

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VZX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VZX)

(-) Exons   (0, 0)

(no "Exon" information available for 2VZX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:221
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
         Q8T6U0_9CNID     3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW 225
               SCOP domains d2vzxa_ A: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.......hhhhhh..--.............hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx A   3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVW 225
                                    12        22        32        42        52        |- |      72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
                                                                                     61  |                                                                                                                                                                 
                                                                                        64-CR8                                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:223
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:225
                                                                                                                                                                                                                                                        225  
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  |  
         Q8T6U0_9CNID     3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW--   -
               SCOP domains d2vzxb_ B: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee.......hhhhhh..--.......................eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx B   3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVWHH 227
                                    12        22        32        42        52        |- |      72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
                                                                                     61  |                                                                                                                                                                   
                                                                                        64-CR8                                                                                                                                                               

Chain C from PDB  Type:PROTEIN  Length:225
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:227
                                                                                                                                                                                                                                                         225   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221   |   
         Q8T6U0_9CNID     2 NLIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW---   -
               SCOP domains d2vzxc_ C: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee.......hhhhhh..--.............hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx C   2 NLIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVWHHH 228
                                    11        21        31        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
                                                                                      61  |                                                                                                                                                                    
                                                                                         64-CR8                                                                                                                                                                

Chain D from PDB  Type:PROTEIN  Length:222
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:224
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    
         Q8T6U0_9CNID     2 NLIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW 225
               SCOP domains d2vzxd_ D: automated matches                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee.......hhhhhh..--.............hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx D   2 NLIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVW 225
                                    11        21        31        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    
                                                                                      61  |                                                                                                                                                                 
                                                                                         64-CR8                                                                                                                                                             

Chain E from PDB  Type:PROTEIN  Length:223
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:225
                                                                                                                                                                                                                                                        225  
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  |  
         Q8T6U0_9CNID     3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW--   -
               SCOP domains d2vzxe_ E: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.......hhhhhh..--.............hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx E   3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVWHH 227
                                    12        22        32        42        52        |- |      72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
                                                                                     61  |                                                                                                                                                                   
                                                                                        64-CR8                                                                                                                                                               

Chain F from PDB  Type:PROTEIN  Length:221
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
         Q8T6U0_9CNID     3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW 225
               SCOP domains d2vzxf_ F: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee.......hhhhhh..--.............hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx F   3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVW 225
                                    12        22        32        42        52        |- |      72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
                                                                                     61  |                                                                                                                                                                 
                                                                                        64-CR8                                                                                                                                                             

Chain G from PDB  Type:PROTEIN  Length:221
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
         Q8T6U0_9CNID     3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW 225
               SCOP domains d2vzxg_ G: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.......hhhhhh..--.............hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx G   3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVW 225
                                    12        22        32        42        52        |- |      72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
                                                                                     61  |                                                                                                                                                                 
                                                                                        64-CR8                                                                                                                                                             

Chain H from PDB  Type:PROTEIN  Length:227
 aligned with Q8T6U0_9CNID | Q8T6U0 from UniProtKB/TrEMBL  Length:225

    Alignment length:229
                                                                                                                                                                                                                                                        225      
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  |      
         Q8T6U0_9CNID     3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTLNLTVKEGAPLPFSYDILTTALHYGNRVFTKYPEDIPDYFKQSFPEGYSWERTMTYEDKGICTIRSDISLEGDCFFQNVRFNGMNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDYHFVDHRIEILSNDSDYNKVKLYEHGVARYSPLPSQAW------   -
               SCOP domains d2vzxh_ H: automated matches                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) GFP-2vzxH01 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (1)
           Pfam domains (2) GFP-2vzxH02 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (2)
           Pfam domains (3) GFP-2vzxH03 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (3)
           Pfam domains (4) GFP-2vzxH04 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (4)
           Pfam domains (5) GFP-2vzxH05 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (5)
           Pfam domains (6) GFP-2vzxH06 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (6)
           Pfam domains (7) GFP-2vzxH07 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (7)
           Pfam domains (8) GFP-2vzxH08 H:3-218                                                                                                                                                                                                     ------------- Pfam domains (8)
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee.......hhhhhh..--.............hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vzx H   3 LIKEDMRVKVHMEGNVNGHAFVIEGEGKGKPYEGTQTANLTVKEGAPLPFSYDILTTAV--hNRVFTKYPEDIPDYFKQSFPEGYSWERTMTFEDKGICTIRSDISLEGDCFFQNVRFKGTNFPPNGPVMQKKTLKWEPSTEKLHVRDGLLVGNINMALLLEGGGHYLCDFKTTYKAKKVVQLPDAHFVDHRIEILGNDSDYNKVKLYEHAVARYSPLPSQVWHHHHHH 231
                                    12        22        32        42        52        |- |      72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222         
                                                                                     61  |                                                                                                                                                                       
                                                                                        64-CR8                                                                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
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 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VZX)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: GFP (101)
(-)
Family: GFP (101)
1aGFP-2vzxH01H:3-218
1bGFP-2vzxH02H:3-218
1cGFP-2vzxH03H:3-218
1dGFP-2vzxH04H:3-218
1eGFP-2vzxH05H:3-218
1fGFP-2vzxH06H:3-218
1gGFP-2vzxH07H:3-218
1hGFP-2vzxH08H:3-218

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q8T6U0_9CNID | Q8T6U0)
biological process
    GO:0008218    bioluminescence    The production of light by certain enzyme-catalyzed reactions in cells.
    GO:0006091    generation of precursor metabolites and energy    The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8T6U0_9CNID | Q8T6U05exb 5exc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2VZX)