2VH9 - JenaLib

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:259 , THR A:261 , HOH B:565 , HOH B:436	BINDING SITE FOR RESIDUE ZN A1267
2	AC2	SOFTWARE	ARG A:33 , TRP A:42 , PRO A:200 , HOH A:460	BINDING SITE FOR RESIDUE GOL A1268
3	AC3	SOFTWARE	ARG B:33 , TRP B:42 , VAL B:202 , HOH B:488	BINDING SITE FOR RESIDUE GOL B1267
4	AC4	SOFTWARE	HOH A:404 , ASP B:259 , THR B:261 , HOH A:489 , HOH A:535	BINDING SITE FOR RESIDUE ZN B1268
5	AC5	SOFTWARE	LEU A:26 , TRP A:27 , THR A:46 , SER A:47 , SER A:79 , TYR A:81 , ASN A:85 , GLN A:86 , GLU A:94 , ASP A:96 , GLU A:98 , SER A:178 , TRP A:180 , HOH A:406 , HOH A:464 , HOH A:472 , HOH A:448 , HOH A:530 , HOH A:432 , HOH A:478 , HOH A:560 , HOH A:485 , HOH A:463 , HOH A:572 , HOH A:480 , HOH A:421 , HOH A:414 , HOH A:410 , TYR B:88 , PRO B:89 , GLY B:90 , LYS B:91 , XYS B:307 , GAL B:310 , HOH B:542 , HOH B:501	BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1269 TO 1277
6	AC6	SOFTWARE	TYR A:88 , PRO A:89 , GLY A:90 , LYS A:91 , XYS A:307 , GAL A:310 , LEU B:26 , TRP B:27 , THR B:46 , SER B:79 , TYR B:81 , ASN B:85 , GLN B:86 , GLU B:94 , ASP B:96 , GLU B:98 , SER B:178 , TRP B:180 , HOH B:440 , HOH B:427 , HOH B:407 , HOH B:446 , HOH B:455 , HOH B:492 , HOH B:456 , HOH B:528 , HOH B:451 , HOH B:542 , HOH B:501 , HOH B:502 , HOH B:503 , HOH B:587 , HOH B:470 , HOH B:511 , HOH B:461 , HOH B:410	BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 1269 TO 1277

SS Bonds (4, 4)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:266
 aligned with Q07524_TROMA | Q07524 from UniProtKB/TrEMBL  Length:295

    Alignment length:271
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294 
         Q07524_TROMA    25 QGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 295
               SCOP domains d2vh9a_ A: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh...hhhhheeeeehhh.eeee..eeeeee.....eeeee...eeeeeeeeeee........eeeeeeee..........eeeeeee........eeeeeee......-----..eee..........eeeeeee...eeeeee..eeeeeee..hhhhh.....eeeeeeee.....hhhhh...hhhhh.eeeeeeeeeeeeee..................hhhhhhhhhhhhhhheeee.hhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vh9 A   1 QGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD-----REMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 266
                                    10        20        30        40        50        60        70        80        90       100       110       120|     |125       135       145       155       165       175       185       195       205       215       225       235       245       255       265 
                                                                                                                                                  121   122

Chain B from PDB  Type:PROTEIN  Length:266
 aligned with Q07524_TROMA | Q07524 from UniProtKB/TrEMBL  Length:295

    Alignment length:271
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294 
         Q07524_TROMA    25 QGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 295
               SCOP domains d2vh9b_ B: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------Glyco_hydro_16-2vh9B01 B:19-198                                                                        -----                                                                             --------------XET_C-2vh9B03 B:213-266                                Pfam domains (1)
           Pfam domains (2) ------------------Glyco_hydro_16-2vh9B02 B:19-198                                                                        -----                                                                             --------------XET_C-2vh9B04 B:213-266                                Pfam domains (2)
         Sec.struct. author ........hhhhhh...hhhhheeeeehhh.eeee..eeeeee.....eeeee...eeeeeeeeeee........eeeeeeee..........eeeeeee........eeeeeee......-----..eee..........eeeeeeee..eeeeee..eeeeeee..hhhhh.....eeeeeeee.....hhhhh...hhhhh.eeeeeeeeeeeeee..................hhhhhhhhhhhhhhheeee.hhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vh9 B   1 QGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD-----REMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 266
                                    10        20        30        40        50        60        70        80        90       100       110       120|     |125       135       145       155       165       175       185       195       205       215       225       235       245       255       265 
                                                                                                                                                  121   122

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (2, 4)

Gene Ontology (14, 14)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q07524_TROMA | Q07524)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016762	xyloglucan:xyloglucosyl transferase activity	Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0042546	cell wall biogenesis	A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0006073	cellular glucan metabolic process	The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0010411	xyloglucan metabolic process	The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
cellular component
	GO:0048046	apoplast	The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	2vh9
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	3.2.1.151
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	3.2.1.4
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 22)

Sites (6, 6)