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(-) Description

Title :  CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION TRANSLOCATOR CHAPERONE SYCD (ALTERNATIVE DIMER)
 
Authors :  C. R. Buttner, I. Sorg, G. R. Cornelis, D. W. Heinz, H. H. Niemann
Date :  16 Nov 07  (Deposition) - 04 Dec 07  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Alternative Dimer Assembly, Chaperone, Sycd, Tetratricopeptide Repeat, Type Iii Secretion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. R. Buttner, I. Sorg, G. R. Cornelis, D. W. Heinz, H. H. Niemann
Structure Of The Yersinia Enterocolitica Type Iii Secretion Chaperone Sycd
J. Mol. Biol. V. 375 997 2008
PubMed-ID: 18054956  |  Reference-DOI: 10.1016/J.JMB.2007.11.009

(-) Compounds

Molecule 1 - CHAPERONE SYCD
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 21-163
    Mutation: YES
    Organism Scientific: YERSINIA ENTEROCOLITICA
    Organism Taxid: 630
    Other Details: YERSINIA ENTEROCOLITICA VIRULENCE PLASMID PYVE227 FROM STRAIN W22703

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1MLY9Mod. Amino AcidN-DIMETHYL-LYSINE
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1MLY18Mod. Amino AcidN-DIMETHYL-LYSINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VGY)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with O87496_YEREN | O87496 from UniProtKB/TrEMBL  Length:168

    Alignment length:132
                                    38        48        58        68        78        88        98       108       118       128       138       148       158  
         O87496_YEREN    29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIANKPEFKELSTRVSSMLEAIKLKKEM 160
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -------TPR_3-2vgyA01 A:36-69             ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vgy A  29 NEISSDTLEQLYSLAFNQYQSGkYEDAHkVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYEEGAVMDIkEPRFPFHAAECLLQkGELAEAESGLFLAQELIANkPEFkELSTRVSSMLEAIkLkkEM 160
                                    38        48  |     58        68        78        88        98   |   108       118       128       138  |    148      |158  
                                                 51-MLY |                                          102-MLY        117-MLY             137-MLY           155-MLY 
                                                       57-MLY                                                                             141-MLY         157-MLY
                                                                                                                                                           158-MLY
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VGY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VGY)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (O87496_YEREN | O87496)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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  2vgy
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O87496_YEREN | O87496: 2vgx 4am9

(-) Related Entries Specified in the PDB File

2vgx STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION TRANSLOCATOR CHAPERONE SYCD