2RHD - JenaLib

Title :   CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM SMALL GTPASE RAB1A

Authors :   A. Dong, X. Xu, J. Lew, Y. H. Lin, C. Khuu, X. Sun, W. Qiu, I. Kozieradzki, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, M. Sundstrom, A. Bochkarev, R. Hui, D. Sukumar, Structural Genomics Consortium (Sgc)

Date :   09 Oct 07 (Deposition) - 23 Oct 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.06

Chains :   Asym./Biol. Unit : A

Keywords :   Gtpase, Rab1A, Cryptosporidium Parvum, Sgc, In Situ, Proteolysis, Gtp-Binding, Nucleotide-Binding, Nucleotide Binding Protein, Structural Genomics, Structural Genomics Consortium (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Dong, X. Xu, J. Lew, Y. H. Lin, C. Khuu, X. Sun, W. Qiu, I. Kozieradzki, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, M. Sundstrom, A. Bochkarev, R. Hui, D. Sukumar
Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1A.
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:23 , GDP A:3800 , HOH A:3808 , HOH A:3809 , HOH A:3834 , HOH A:3861	BINDING SITE FOR RESIDUE MG A 1001
2	AC2	SOFTWARE	ASP A:95 , HOH A:3806 , HOH A:3831	BINDING SITE FOR RESIDUE MG A 1002
3	AC3	SOFTWARE	ASP A:93 , ASP A:95 , HOH A:3804 , HOH A:3814 , HOH A:3816 , HOH A:3818 , HOH A:3821	BINDING SITE FOR RESIDUE MG A 1003
4	AC4	SOFTWARE	GLY A:19 , VAL A:20 , GLY A:21 , LYS A:22 , SER A:23 , CYS A:24 , TYR A:34 , ASP A:36 , LYS A:101 , ASN A:122 , LYS A:123 , ASP A:125 , LEU A:126 , SER A:152 , ALA A:153 , LYS A:154 , MG A:1001 , HOH A:3809 , HOH A:3834 , HOH A:3846 , HOH A:3858 , HOH A:3888 , HOH A:3936	BINDING SITE FOR RESIDUE GDP A 3800

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:164
 aligned with Q7YYW6_CRYPV | Q7YYW6 from UniProtKB/TrEMBL  Length:203

    Alignment length:173
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   
         Q7YYW6_CRYPV     2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 174
               SCOP domains d2rhda_ A: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------Ras-2rhdA01 A:11-172                                                                                                                                              --- Pfam domains
         Sec.struct. author .....eeeeeeee.....hhhhhhhhhhhh..............eeeeeee..eeeeeeee....---------.......eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhd A   3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG---------SYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
                                    12        22        32        42        52        62    |    -    |   82        92       102       112       122       132       142       152       162       172   
                                                                                           67        77

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q7YYW6_CRYPV | Q7YYW6)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
biological process
	GO:0007264	small GTPase mediated signal transduction	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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