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(-) Description

Title :  CRYSTAL STRUCTURE OF FLAVIN-CONTAINING MONOOXYGENASE PHZS
 
Authors :  J. E. Ladner, J. F. Parsons, B. T. Greenhagen, H. Robinson
Date :  03 Oct 07  (Deposition) - 20 May 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Monooxygenase, Flavin, Fad, Phenazine, Pyocyanin, Pseudomonas, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. T. Greenhagen, K. Shi, H. Robinson, S. Gamage, A. K. Bera, J. E. Ladner, J. F. Parsons
Crystal Structure Of The Pyocyanin Biosynthetic Protein Phzs.
Biochemistry V. 47 5281 2008
PubMed-ID: 18416536  |  Reference-DOI: 10.1021/BI702480T
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FLAVIN-CONTAINING MONOOXYGENASE
    Chains: A
    EC Number: 1.14.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL-21(DE3)
    Expression System Vector Type: PLASMID
    Gene: PHZS
    Organism Scientific: PSEUDOMONAS AERUGINOSA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:11 , GLY A:13 , ILE A:14 , GLY A:15 , LEU A:34 , GLU A:35 , SER A:36 , LEU A:43 , GLY A:44 , ILE A:47 , ARG A:106 , GLY A:131 , ALA A:164 , ASP A:165 , GLY A:166 , ARG A:191 , TRP A:253 , ASN A:254 , GLY A:309 , ASP A:310 , GLY A:322 , ALA A:323 , HOH A:407 , HOH A:408 , HOH A:409 , HOH A:423 , HOH A:437BINDING SITE FOR RESIDUE FAD A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RGJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RGJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RGJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RGJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2RGJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
 aligned with Q9HWG9_PSEAE | Q9HWG9 from UniProtKB/TrEMBL  Length:402

    Alignment length:376
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373      
         Q9HWG9_PSEAE     4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNADVAAALREYEEARRPTANKIILANREREKEEWAAASRP 379
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAD_binding_3-2rgjA01 A:284-365                                                   -------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAD_binding_3-2rgjA02 A:284-365                                                   -------------- Pfam domains (2)
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh...eeeeee..........eeeehhhhhhhhhhh.hhhhhhh......eeeee.....eeeeee.hhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhee..eeeeeee....eeeeee.....eeeeee.eeee.....hhhhhhhh......eeeeeeeeeeeeee.......eeeeee.....eeeeee.hhhhhhh..eeeeeeeeeehhhhh............hhhhhhhhh........hhhhhhhheeeeeeeeeee...........eee.hhhhhh.......hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rgj A   4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQmILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITmWRGVTEFDRFLDGKTmIVANDEHWSRLVAYPISARHAAEGKSLVNWVCmVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPmVDRDPLPHWGRGRITLLGDAAHLmYPmGANGASQAILDGIELAAALARNADVAAALREYEEARRPTANKIILANREREKEEWAAASRP 379
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183     | 193       203 |     213       223       233    |  243       253       263       273       283       293       303       313 |  |  323       333       343       353       363       373      
                                                                                                                                     111-MSE                                                                       189-MSE         205-MSE                          238-MSE                                              291-MSE                 315-MSE                                                            
                                                                                                                                                                                                                                                                                                                                                    318-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RGJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RGJ)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9HWG9_PSEAE | Q9HWG9)
molecular function
    GO:0071949    FAD binding    Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0044550    secondary metabolite biosynthetic process    The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon.

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        Q9HWG9_PSEAE | Q9HWG9: 3c96

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