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(-) Description

Title :  HUMAN CATIONIC TRYPSIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR (BPTI)
 
Authors :  M. A. Salameh, A. S. Soares, E. S. Radisky
Date :  14 Sep 07  (Deposition) - 11 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.46
Chains :  Asym. Unit :  A,B,C,I
Biol. Unit 1:  A,B,C,I  (1x)
Biol. Unit 2:  A (2x),B (2x),C (2x),I (2x)
Keywords :  Human Cationic Trypsin, Serine Protease, Bovine Pancreatic Trypsin Inhibitor, Bpti, Calcium, Digestion, Disease Mutation, Hydrolase, Metal-Binding, Secreted, Sulfation, Zymogen, Pharmaceutical, Protease Inhibitor, Serine Protease Inhibitor, Hydrolase/Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Salameh, A. S. Soares, A. Hockla, E. S. Radisky
Structural Basis For Accelerated Cleavage Of Bovine Pancreatic Trypsin Inhibitor (Bpti) By Human Mesotrypsin.
J. Biol. Chem. V. 283 4115 2008
PubMed-ID: 18077447  |  Reference-DOI: 10.1074/JBC.M708268200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRYPSIN-1
    ChainsA, B
    EC Number3.4.21.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainROSETTA2(DE3)
    Expression System Taxid562
    GenePRSS1, TRP1, TRY1, TRYP1
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTRYPSIN I, CATIONIC TRYPSINOGEN, SERINE PROTEASE 1
 
Molecule 2 - PANCREATIC TRYPSIN INHIBITOR
    ChainsI, C
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    StrainA1153
    SynonymBASIC PROTEASE INHIBITOR, BPI, BPTI, APROTININ

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCI
Biological Unit 1 (1x)ABCI
Biological Unit 2 (2x)A (2x)B (2x)C (2x)I (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 26)

Asymmetric Unit (2, 26)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2SO424Ligand/IonSULFATE ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2SO424Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:70 , ASN A:72 , VAL A:75 , GLU A:80 , HOH A:274 , HOH A:311BINDING SITE FOR RESIDUE CA A 1
02AC2SOFTWARELYS A:60 , SER A:61 , HOH A:398 , HOH A:462 , HOH A:468 , LYS C:46BINDING SITE FOR RESIDUE SO4 A 6
03AC3SOFTWARETHR A:132 , SER A:164 , GLN A:165 , HOH A:351BINDING SITE FOR RESIDUE SO4 A 10
04AC4SOFTWARETHR A:177 , SER A:178 , SO4 A:247 , HOH A:465BINDING SITE FOR RESIDUE SO4 A 12
05AC5SOFTWAREARG A:90 , HOH A:346 , HOH A:383BINDING SITE FOR RESIDUE SO4 A 14
06AC6SOFTWARESO4 A:12 , ASN A:100 , SER A:178 , ASN A:179 , HOH A:338 , HOH A:465BINDING SITE FOR RESIDUE SO4 A 247
07AC7SOFTWARESER A:110 , ARG A:111 , HOH A:381BINDING SITE FOR RESIDUE SO4 A 248
08AC8SOFTWARELYS A:97 , LEU A:99 , TRP A:215 , HOH A:337 , ARG C:39BINDING SITE FOR RESIDUE SO4 A 249
09AC9SOFTWAREGLU B:70 , ASN B:72 , VAL B:75 , GLU B:77 , GLU B:80 , HOH B:291BINDING SITE FOR RESIDUE CA B 1
10BC1SOFTWAREPHE B:184 , LEU B:185 , GLU B:186 , HOH B:268 , HOH B:329 , HOH B:334 , HOH B:400 , HOH B:427BINDING SITE FOR RESIDUE SO4 B 4
11BC2SOFTWAREPRO A:173 , LYS A:175 , LYS A:224 , HOH A:367 , HOH A:394 , ASN B:115 , ALA B:116 , HOH B:384BINDING SITE FOR RESIDUE SO4 B 5
12BC3SOFTWARELYS B:60 , SER B:61 , HOH B:399 , HOH B:489 , HOH B:513 , HOH B:517 , LYS I:46BINDING SITE FOR RESIDUE SO4 B 7
13BC4SOFTWARELYS B:87 , HOH B:368 , HOH B:418 , ARG I:42BINDING SITE FOR RESIDUE SO4 B 8
14BC5SOFTWAREASN B:100 , PRO B:129 , ALA B:130 , THR B:132 , ASN B:179 , SO4 B:248 , HOH B:383 , HOH B:387 , HOH B:389 , HOH B:485BINDING SITE FOR RESIDUE SO4 B 11
15BC6SOFTWARESER B:110 , ARG B:111 , HOH B:501BINDING SITE FOR RESIDUE SO4 B 15
16BC7SOFTWAREASN B:21 , GLN B:156BINDING SITE FOR RESIDUE SO4 B 247
17BC8SOFTWARESO4 B:11 , THR B:132 , GLN B:165 , THR B:177 , SER B:178 , HOH B:288 , HOH B:405BINDING SITE FOR RESIDUE SO4 B 248
18BC9SOFTWARELYS B:97 , LEU B:99 , LYS B:175 , TRP B:215 , ARG I:39BINDING SITE FOR RESIDUE SO4 B 249
19CC1SOFTWAREILE B:47 , ASN B:48 , LYS B:239 , ILE B:242 , HOH B:330 , HOH B:511BINDING SITE FOR RESIDUE SO4 B 250
20CC2SOFTWAREGLU I:7 , ARG I:42 , HOH I:66 , HOH I:80 , HOH I:88 , HOH I:91 , HOH I:107BINDING SITE FOR RESIDUE SO4 I 59
21CC3SOFTWAREARG I:20 , TYR I:35 , GLY I:37 , ALA I:40 , HOH I:72 , HOH I:79 , HOH I:104 , HOH I:120 , HOH I:128BINDING SITE FOR RESIDUE SO4 I 60
22CC4SOFTWAREASN B:84 , SER B:109 , SER B:110 , HOH B:490 , ARG I:1 , PRO I:2BINDING SITE FOR RESIDUE SO4 I 61
23CC5SOFTWARETYR I:10 , THR I:11 , GLY I:12BINDING SITE FOR RESIDUE SO4 I 62
24CC6SOFTWARETYR A:151 , PRO A:152 , ASP A:153 , HOH A:251 , HOH A:291 , ARG C:17 , TYR I:23 , GLY I:28 , HOH I:100 , HOH I:121BINDING SITE FOR RESIDUE SO4 I 63
25CC7SOFTWAREARG C:20 , TYR C:35 , GLY C:37 , ALA C:40 , HOH C:73 , HOH C:77BINDING SITE FOR RESIDUE SO4 C 59
26CC8SOFTWAREPHE C:4 , LYS C:41 , ARG C:42 , HOH C:84 , HOH C:109BINDING SITE FOR RESIDUE SO4 C 60

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:22 -A:157
2A:42 -A:58
3A:136 -A:201
4A:168 -A:182
5A:191 -A:220
6B:22 -B:157
7B:42 -B:58
8B:136 -B:201
9B:168 -B:182
10B:191 -B:220
11C:5 -C:55
12C:14 -C:38
13C:30 -C:51
14I:5 -I:55
15I:14 -I:38
16I:30 -I:51

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RA3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 20)

Asymmetric Unit (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_006720N29ITRY1_HUMANDisease (PCTT)111033566A/BN21I
02UniProtVAR_012712N29TTRY1_HUMANDisease (PCTT)111033566A/BN21T
03UniProtVAR_037908N54STRY1_HUMANDisease (PCTT)144422014A/BN48S
04UniProtVAR_037909E79KTRY1_HUMANDisease (PCTT)111033564A/BE74K
05UniProtVAR_011654L104PTRY1_HUMANDisease (PCTT)  ---A/BL99P
06UniProtVAR_011655R116CTRY1_HUMANDisease (PCTT)387906698A/BR111C
07UniProtVAR_012713R122CTRY1_HUMANDisease (PCTT)111033568A/BH117C
08UniProtVAR_006721R122HTRY1_HUMANDisease (PCTT)267606982A/BH117H
09UniProtVAR_036299T137MTRY1_HUMANUnclassified117497341A/BT134M
10UniProtVAR_011656C139FTRY1_HUMANDisease (PCTT)  ---A/BC136F

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_006720N29ITRY1_HUMANDisease (PCTT)111033566A/BN21I
02UniProtVAR_012712N29TTRY1_HUMANDisease (PCTT)111033566A/BN21T
03UniProtVAR_037908N54STRY1_HUMANDisease (PCTT)144422014A/BN48S
04UniProtVAR_037909E79KTRY1_HUMANDisease (PCTT)111033564A/BE74K
05UniProtVAR_011654L104PTRY1_HUMANDisease (PCTT)  ---A/BL99P
06UniProtVAR_011655R116CTRY1_HUMANDisease (PCTT)387906698A/BR111C
07UniProtVAR_012713R122CTRY1_HUMANDisease (PCTT)111033568A/BH117C
08UniProtVAR_006721R122HTRY1_HUMANDisease (PCTT)267606982A/BH117H
09UniProtVAR_036299T137MTRY1_HUMANUnclassified117497341A/BT134M
10UniProtVAR_011656C139FTRY1_HUMANDisease (PCTT)  ---A/BC136F

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (10, 40)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_006720N29ITRY1_HUMANDisease (PCTT)111033566A/BN21I
02UniProtVAR_012712N29TTRY1_HUMANDisease (PCTT)111033566A/BN21T
03UniProtVAR_037908N54STRY1_HUMANDisease (PCTT)144422014A/BN48S
04UniProtVAR_037909E79KTRY1_HUMANDisease (PCTT)111033564A/BE74K
05UniProtVAR_011654L104PTRY1_HUMANDisease (PCTT)  ---A/BL99P
06UniProtVAR_011655R116CTRY1_HUMANDisease (PCTT)387906698A/BR111C
07UniProtVAR_012713R122CTRY1_HUMANDisease (PCTT)111033568A/BH117C
08UniProtVAR_006721R122HTRY1_HUMANDisease (PCTT)267606982A/BH117H
09UniProtVAR_036299T137MTRY1_HUMANUnclassified117497341A/BT134M
10UniProtVAR_011656C139FTRY1_HUMANDisease (PCTT)  ---A/BC136F

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (5, 10)

Asymmetric Unit (5, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.TRY1_HUMAN24-244
 
  2A:16-243
B:16-243
2BPTI_KUNITZ_2PS50279 Pancreatic trypsin inhibitor (Kunitz) family profile.BPT1_BOVIN40-90
 
  2C:5-55
I:5-55
3TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.TRY1_HUMAN59-64
 
  2A:53-58
B:53-58
4BPTI_KUNITZ_1PS00280 Pancreatic trypsin inhibitor (Kunitz) family signature.BPT1_BOVIN68-86
 
  2C:33-51
I:33-51
5TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.TRY1_HUMAN194-205
 
  2A:189-200
B:189-200
Biological Unit 1 (5, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.TRY1_HUMAN24-244
 
  2A:16-243
B:16-243
2BPTI_KUNITZ_2PS50279 Pancreatic trypsin inhibitor (Kunitz) family profile.BPT1_BOVIN40-90
 
  2C:5-55
I:5-55
3TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.TRY1_HUMAN59-64
 
  2A:53-58
B:53-58
4BPTI_KUNITZ_1PS00280 Pancreatic trypsin inhibitor (Kunitz) family signature.BPT1_BOVIN68-86
 
  2C:33-51
I:33-51
5TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.TRY1_HUMAN194-205
 
  2A:189-200
B:189-200
Biological Unit 2 (5, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.TRY1_HUMAN24-244
 
  4A:16-243
B:16-243
2BPTI_KUNITZ_2PS50279 Pancreatic trypsin inhibitor (Kunitz) family profile.BPT1_BOVIN40-90
 
  4C:5-55
I:5-55
3TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.TRY1_HUMAN59-64
 
  4A:53-58
B:53-58
4BPTI_KUNITZ_1PS00280 Pancreatic trypsin inhibitor (Kunitz) family signature.BPT1_BOVIN68-86
 
  4C:33-51
I:33-51
5TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.TRY1_HUMAN194-205
 
  4A:189-200
B:189-200

(-) Exons   (0, 0)

(no "Exon" information available for 2RA3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with TRY1_HUMAN | P07477 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:224
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243    
          TRY1_HUMAN     24 IVGGYNCEENSVPYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS  247
               SCOP domains d2ra3a_ A: Trypsin(ogen)                                                                                                                                                                                                         SCOP domains
               CATH domains 2ra3A01     2ra3A02 A:28-120,A:233-246 Trypsin-like serine proteases                                  2ra3A01 A:16-27,A:121-232 Trypsin-like serine proteases                                                     2ra3A02        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeee...eeeeeeeee..eeeehhhhh....eeee............eeeeeeeeee.............eeeee........................eeeeee...............eeeeee..hhhhhhhhh.......eeee................eeee..eeeeeeee..........eeeee...hhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -----I------------------------S------------------------K------------------------P-----------C-----C--------------M-F------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----T--------------------------------------------------------------------------------------------H----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) TRYPSIN_DOM  PDB: A:16-243 UniProt: 24-244                                                                                                                                                                                   --- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------ PROSITE (2)
                PROSITE (3) -----------------------------------TRYPSI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ra3 A   16 IVGGYNCEENSVPYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDAGGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS  246
                                    25        37        47        57        67|       78        88        98       108       118      |129||     140       150       160       170       180   |   188       198     ||212    || 222       232       242    
                                             34|                            67|                                                     125|  ||                                                184A 188A              204|     217| |                          
                                              37                             69                                                      127  ||                                                                        209      219 |                          
                                                                                                                                        130|                                                                                  221A                          
                                                                                                                                         132                                                                                                                

Chain B from PDB  Type:PROTEIN  Length:224
 aligned with TRY1_HUMAN | P07477 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:224
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243    
          TRY1_HUMAN     24 IVGGYNCEENSVPYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS  247
               SCOP domains d2ra3b_ B: Trypsin(ogen)                                                                                                                                                                                                         SCOP domains
               CATH domains 2ra3B01     2ra3B02 B:28-120,B:233-246 Trypsin-like serine proteases                                  2ra3B01 B:16-27,B:121-232 Trypsin-like serine proteases                                                     2ra3B02        CATH domains
           Pfam domains (1) Trypsin-2ra3B01 B:16-238                                                                                                                                                                                                -------- Pfam domains (1)
           Pfam domains (2) Trypsin-2ra3B02 B:16-238                                                                                                                                                                                                -------- Pfam domains (2)
         Sec.struct. author ....ee.hhh....eeeee...eeeeeeeee..eeeehhhhh....eeee............eeeeeeeeee.............eeeee........................eeeeee...............eeeeee..hhhhhhhhh.......eeee................eeee..eeeeeeee..........eeeee...hhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -----I------------------------S------------------------K------------------------P-----------C-----C--------------M-F------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----T--------------------------------------------------------------------------------------------H----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) TRYPSIN_DOM  PDB: B:16-243 UniProt: 24-244                                                                                                                                                                                   --- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------ PROSITE (2)
                PROSITE (3) -----------------------------------TRYPSI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ra3 B   16 IVGGYNCEENSVPYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDAGGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS  246
                                    25        37        47        57        67|       78        88        98       108       118      |129||     140       150       160       170       180   |   188       198     ||212    || 222       232       242    
                                             34|                            67|                                                     125|  ||                                                184A 188A              204|     217| |                          
                                              37                             69                                                      127  ||                                                                        209      219 |                          
                                                                                                                                        130|                                                                                  221A                          
                                                                                                                                         132                                                                                                                

Chain C from PDB  Type:PROTEIN  Length:56
 aligned with BPT1_BOVIN | P00974 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:56
                                    45        55        65        75        85      
          BPT1_BOVIN     36 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCG   91
               SCOP domains d2ra3c_ C: Pancreatic trypsin inhibitor, BPTI            SCOP domains
               CATH domains 2ra3C00 C:1-56 Factor Xa Inhibitor                       CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..........eeeeee.hhhh.eeeeee...........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----BPTI_KUNITZ_2  PDB: C:5-55 UniProt: 40-90          - PROSITE (2)
                PROSITE (3) --------------------------------BPTI_KUNITZ_1      ----- PROSITE (3)
                 Transcript -------------------------------------------------------- Transcript
                2ra3 C    1 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCG   56
                                    10        20        30        40        50      

Chain I from PDB  Type:PROTEIN  Length:58
 aligned with BPT1_BOVIN | P00974 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:58
                                    45        55        65        75        85        
          BPT1_BOVIN     36 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA   93
               SCOP domains d2ra3i_ I: Pancreatic trypsin inhibitor, BPTI              SCOP domains
               CATH domains 2ra3I00 I:1-58 Factor Xa Inhibitor                         CATH domains
           Pfam domains (1) ---Kunitz_BPTI-2ra3I01 I:4-56                           -- Pfam domains (1)
           Pfam domains (2) ---Kunitz_BPTI-2ra3I02 I:4-56                           -- Pfam domains (2)
         Sec.struct. author .hhhhhh..........eeeeeee....eeeeeee...........hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----BPTI_KUNITZ_2  PDB: I:5-55 UniProt: 40-90          --- PROSITE (2)
                PROSITE (3) --------------------------------BPTI_KUNITZ_1      ------- PROSITE (3)
                 Transcript ---------------------------------------------------------- Transcript
                2ra3 I    1 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA   58
                                    10        20        30        40        50        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
2a2ra3A01A:16-27,A:121-232
2b2ra3B01B:16-27,B:121-232
2c2ra3A02A:28-120,A:233-246
2d2ra3B02B:28-120,B:233-246

(-) Pfam Domains  (2, 4)

Asymmetric Unit

(-) Gene Ontology  (21, 22)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (TRY1_HUMAN | P07477)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0009235    cobalamin metabolic process    The chemical reactions and pathways involving cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
    GO:0007586    digestion    The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.
    GO:0022617    extracellular matrix disassembly    A process that results in the breakdown of the extracellular matrix.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain C,I   (BPT1_BOVIN | P00974)
molecular function
    GO:0030414    peptidase inhibitor activity    Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
    GO:0019870    potassium channel inhibitor activity    Stops, prevents, or reduces the activity of a potassium channel.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004867    serine-type endopeptidase inhibitor activity    Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme.
biological process
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
    GO:0010466    negative regulation of peptidase activity    Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
    GO:0090331    negative regulation of platelet aggregation    Any process that decreases the rate, frequency or extent of platelet aggregation. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules.
    GO:0070495    negative regulation of thrombin-activated receptor signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of thrombin-activated receptor protein signaling pathway activity. A thrombin receptor signaling pathway is the series of molecular signals generated as a consequence of a thrombin-activated receptor binding to one of its physiological ligands.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BPT1_BOVIN | P009741aal 1b0c 1bhc 1bpi 1bpt 1brb 1bth 1bti 1bz5 1bzx 1cbw 1co7 1d0d 1eaw 1ejm 1f5r 1f7z 1fak 1fan 1fy8 1g6x 1jv8 1jv9 1k09 1k6u 1ld5 1ld6 1mtn 1nag 1oa5 1oa6 1p2i 1p2j 1p2k 1p2m 1p2n 1p2o 1p2q 1pit 1qlq 1t7c 1t8l 1t8m 1t8n 1t8o 1tpa 1uua 1uub 1ykt 1ylc 1yld 2fi3 2fi4 2fi5 2ftl 2ftm 2hex 2ijo 2kai 2ptc 2r9p 2tgp 2tpi 2zjx 2zvx 3btd 3bte 3btf 3btg 3bth 3btk 3btm 3btq 3btt 3btw 3fp6 3fp7 3fp8 3gym 3ldi 3ldj 3ldm 3otj 3p92 3p95 3tgi 3tgj 3tgk 3tpi 3u1j 3wny 4bnr 4dg4 4pti 4tpi 4wwy 4wxv 4y0y 4y0z 4y10 4y11 5jb4 5jb5 5jb6 5jb7 5pti 6pti 7pti 8pti 9pti
        TRY1_HUMAN | P074771fxy 1trn 4wwy 4wxv

(-) Related Entries Specified in the PDB File

2r9p HUMAN MESOTRYPSIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR