2QS7 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE OF THE DSRE/DSRF-LIKE FAMILY (SSO1126) FROM SULFOLOBUS SOLFATARICUS P2 AT 2.09 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   30 Jul 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.09

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D  (3x)

Keywords :   Putative Oxidoreductase Of The Dsre/Dsrf-Like Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Protein Of Unknown Function (Np_342590. 1) From Sulfolobus Solfataricus At 2. 09 A Resolution
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED PROTEIN
	Atcc	:	35092
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NP_342590.1, SSO1126
	Organism Scientific	:	SULFOLOBUS SOLFATARICUS P2
	Organism Taxid	:	273057
	Strain	:	P2, DSM 1617, JCM 11322

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (3x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 37)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	EPE	2	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	MSE	32	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 25)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 27)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EPE	3	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE D:142 , HOH D:148	BINDING SITE FOR RESIDUE CL D 144
2	AC2	SOFTWARE	PHE A:142 , HOH A:146 , PHE B:142 , PHE C:142	BINDING SITE FOR RESIDUE CL A 144
3	AC3	SOFTWARE	ALA D:129	BINDING SITE FOR RESIDUE CL D 145
4	AC4	SOFTWARE	GLY D:137 , GLY D:138 , THR D:139 , THR D:140 , HOH D:147	BINDING SITE FOR RESIDUE EPE D 146
5	AC5	SOFTWARE	GLY A:137 , GLY A:138 , THR A:139 , THR A:140 , GLY B:138 , THR B:139 , THR B:140 , GLY C:138 , THR C:139 , THR C:140 , HOH C:144	BINDING SITE FOR RESIDUE EPE A 145

(no "SS Bond" information available for 2QS7)

(no "Cis Peptide Bond" information available for 2QS7)

(no "SAP(SNP)/Variant" information available for 2QS7)

(no "PROSITE Motif" information available for 2QS7)

(no "Exon" information available for 2QS7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:138
 aligned with Q97Z17_SULSO | Q97Z17 from UniProtKB/TrEMBL  Length:143

    Alignment length:138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135        
         Q97Z17_SULSO     6 KKKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQMGPIMMQKMQEMKYPMWHQLVQQAKEIGEVKVFACSTTMEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qs7A00 A:6-143  [code=3.40.1260.10, no name defined]                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhheeeeeeehhhhhhh..hhhhh.....eeehhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qs7 A   6 KKKLSIIVFSGTIDKLmPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQmGPImmQKmQEmKYPmWHQLVQQAKEIGEVKVFACSTTmEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
                                    15      | 25        35        45        55        65    |   75  |  |  85        95       105  |    115       125       135        
                                           22-MSE                                          70-MSE|  |  |   |                    108-MSE                               
                                                                                               74-MSE  |   |                                                          
                                                                                                75-MSE |   |                                                          
                                                                                                   78-MSE  |                                                          
                                                                                                      81-MSE                                                          
                                                                                                          85-MSE

Chain B from PDB  Type:PROTEIN  Length:138
 aligned with Q97Z17_SULSO | Q97Z17 from UniProtKB/TrEMBL  Length:143

    Alignment length:138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135        
         Q97Z17_SULSO     6 KKKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQMGPIMMQKMQEMKYPMWHQLVQQAKEIGEVKVFACSTTMEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qs7B00 B:6-143  [code=3.40.1260.10, no name defined]                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeeeehhhhhhh..hhhhh.....eeehhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qs7 B   6 KKKLSIIVFSGTIDKLmPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQmGPImmQKmQEmKYPmWHQLVQQAKEIGEVKVFACSTTmEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
                                    15      | 25        35        45        55        65    |   75  |  |  85        95       105  |    115       125       135        
                                           22-MSE                                          70-MSE|  |  |   |                    108-MSE                               
                                                                                               74-MSE  |   |                                                          
                                                                                                75-MSE |   |                                                          
                                                                                                   78-MSE  |                                                          
                                                                                                      81-MSE                                                          
                                                                                                          85-MSE

Chain C from PDB  Type:PROTEIN  Length:138
 aligned with Q97Z17_SULSO | Q97Z17 from UniProtKB/TrEMBL  Length:143

    Alignment length:138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135        
         Q97Z17_SULSO     6 KKKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQMGPIMMQKMQEMKYPMWHQLVQQAKEIGEVKVFACSTTMEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qs7C00 C:6-143  [code=3.40.1260.10, no name defined]                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeeeehhhhhhh..hhhhh.....eeehhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qs7 C   6 KKKLSIIVFSGTIDKLmPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQmGPImmQKmQEmKYPmWHQLVQQAKEIGEVKVFACSTTmEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
                                    15      | 25        35        45        55        65    |   75  |  |  85        95       105  |    115       125       135        
                                           22-MSE                                          70-MSE|  |  |   |                    108-MSE                               
                                                                                               74-MSE  |   |                                                          
                                                                                                75-MSE |   |                                                          
                                                                                                   78-MSE  |                                                          
                                                                                                      81-MSE                                                          
                                                                                                          85-MSE

Chain D from PDB  Type:PROTEIN  Length:138
 aligned with Q97Z17_SULSO | Q97Z17 from UniProtKB/TrEMBL  Length:143

    Alignment length:138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135        
         Q97Z17_SULSO     6 KKKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQMGPIMMQKMQEMKYPMWHQLVQQAKEIGEVKVFACSTTMEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qs7D00 D:6-143  [code=3.40.1260.10, no name defined]                                                                                      CATH domains
           Pfam domains (1) DrsE_2-2qs7D01 D:6-142                                                                                                                   - Pfam domains (1)
           Pfam domains (2) DrsE_2-2qs7D02 D:6-142                                                                                                                   - Pfam domains (2)
           Pfam domains (3) DrsE_2-2qs7D03 D:6-142                                                                                                                   - Pfam domains (3)
           Pfam domains (4) DrsE_2-2qs7D04 D:6-142                                                                                                                   - Pfam domains (4)
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeeeehhhhhhh..hhhhh.....eeehhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qs7 D   6 KKKLSIIVFSGTIDKLmPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQIDKNYEQmGPImmQKmQEmKYPmWHQLVQQAKEIGEVKVFACSTTmEFFGIKREDLAEFVDDVVGVATFLDRAEGGTTLFI 143
                                    15      | 25        35        45        55        65    |   75  |  |  85        95       105  |    115       125       135        
                                           22-MSE                                          70-MSE|  |  |   |                    108-MSE                               
                                                                                               74-MSE  |   |                                                          
                                                                                                75-MSE |   |                                                          
                                                                                                   78-MSE  |                                                          
                                                                                                      81-MSE                                                          
                                                                                                          85-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2QS7)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Hypothetical Protein Ychn; Chain: A, (8)

Homologous Superfamily: [code=3.40.1260.10, no name defined] (8)

Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2, dsm 1617, jcm 11322. (1)

1a	2qs7A00	A:6-143
1b	2qs7B00	B:6-143
1c	2qs7C00	C:6-143
1d	2qs7D00	D:6-143

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: DsrEFH-like (7)

Family: DrsE_2 (2)

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (1)

1a	DrsE_2-2qs7D01	D:6-142
1b	DrsE_2-2qs7D02	D:6-142
1c	DrsE_2-2qs7D03	D:6-142
1d	DrsE_2-2qs7D04	D:6-142

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2QS7)

Asymmetric Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 37)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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